3TRV

Crystal structure of quasiracemic villin headpiece subdomain containing (F5Phe17) substitution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.155
  • R-Value Work: 0.137

Literature

Macromolecules
Sequence Display for 3TRV

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 8670.80

Macromolecule Entities
Molecule Chains Length Organism Details
L-Villin-1 A 35 Gallus gallus Fragment: headpiece subdomain (UNP residues 792-826)
Mutation: N27H
Gene Name(s): VIL1 Gene View VIL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 17 Unique
ID Chains Type Formula 2D Diagram Parent
PF5
Query on PF5
A L-PEPTIDE LINKING C9 H6 F5 N O2 PHE
DLE
Query on DLE
B D-PEPTIDE LINKING C6 H13 N O2 --
DSN
Query on DSN
B D-PEPTIDE LINKING C3 H7 N O3 --
DAS
Query on DAS
B D-PEPTIDE LINKING C4 H7 N O4 --
DGL
Query on DGL
B D-PEPTIDE LINKING C5 H9 N O4 --
DPN
Query on DPN
B D-PEPTIDE LINKING C9 H11 N O2 --
DLY
Query on DLY
B D-PEPTIDE LINKING C6 H14 N2 O2 --
DAL
Query on DAL
B D-PEPTIDE LINKING C3 H7 N O2 --
DVA
Query on DVA
B D-PEPTIDE LINKING C5 H11 N O2 --
MED
Query on MED
B D-PEPTIDE LINKING C5 H11 N O2 S --
DTH
Query on DTH
B D-PEPTIDE LINKING C4 H9 N O3 --
DAR
Query on DAR
B D-PEPTIDE LINKING C6 H15 N4 O2 --
DSG
Query on DSG
B D-PEPTIDE LINKING C4 H8 N2 O3 --
DPR
Query on DPR
B D-PEPTIDE LINKING C5 H9 N O2 --
DTR
Query on DTR
B D-PEPTIDE LINKING C11 H12 N2 O2 --
DGN
Query on DGN
B D-PEPTIDE LINKING C5 H10 N2 O3 --
DHI
Query on DHI
B D-PEPTIDE LINKING C6 H10 N3 O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.155
  • R-Value Work: 0.137
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 20.19 α = 75.06
b = 22.39 β = 82.00
c = 32.51 γ = 87.56

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2011-09-11
  • Released Date: 2012-01-25
  • Deposition author(s): Mortenson, D.E., Satyshur, K.A., Gellman, S.H., Forest, K.T.

Revision History

  • Version 1_0: 2012-01-25

    Type: Initial release

  • Version 1_1: 2012-02-08

    Type: Database references

  • Version 1_2: 2012-02-22

    Type: Database references

  • Version 1_3: 2017-11-08

    Type: Refinement description