3TAJ

Crystal structure of C-lobe of bovine lactoferrin complexed with Nabumetone at 1.7A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 3TAJ

Classification: HYDROLASE

Total Structure Weight: 39332.57

Macromolecule Entities
Molecule Chains Length Organism Details
Lactotransferrin A 345 Bos taurus EC#: 3.4.21 IUBMB
Fragment: C-lobe (UNP RESIDUES 361-705)
Mutation: N565K, K608E
Gene Name(s): LTF Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NBO
Query on NBO

A nabumetone
4-(6-methoxynaphthalen-2-yl)butan-2-one (Synonym)
C15 H16 O2
BLXXJMDCKKHMKV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO3
Query on CO3

A CARBONATE ION
C O3
BVKZGUZCCUSVTD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.202
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 61.35 α = 90.00
b = 49.83 β = 106.63
c = 65.07 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2011-08-04
  • Released Date: 2011-08-31
  • Deposition author(s): Yamini, S., Gautam, L., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.

Revision History

  • Version 1_0: 2011-08-31

    Type: Initial release