3NYJ

Crystal Structure Analysis of APP E2 domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.380
  • R-Value Work: 0.297

Literature

Macromolecules
Sequence Display for 3NYJ

Classification: PROTEIN FIBRIL

Total Structure Weight: 24960.97

Macromolecule Entities
Molecule Chains Length Organism Details
Amyloid beta A4 protein A 207 Homo sapiens Gene Name(s): APP Gene View A4 AD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OS
Query on OS

A OSMIUM ION
Os
XQBKHDFIPARBOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.380
  • R-Value Work: 0.297
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 114.98 α = 90.00
b = 40.15 β = 90.00
c = 58.38 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2010-07-15
  • Released Date: 2011-06-01
  • Deposition author(s): Ha, Y., Hu, J., Lee, S., Liu, X.

Revision History

  • Version 1_0: 2011-06-01

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-11-08

    Type: Refinement description