3L81

Crystal structure of adaptor protein complex 4 (AP-4) mu4 subunit C-terminal domain, in complex with a sorting peptide from the amyloid precursor protein (APP)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 3L81

Classification: TRANSPORT PROTEIN

Total Structure Weight: 34351.99

Macromolecule Entities
Molecule Chains Length Organism Details
AP-4 complex subunit mu-1 A 301 Homo sapiens Fragment: C-terminus, residues 160-453
Mutation: C235S, C431S
Gene Name(s): AP4M1 Gene View MUARP2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Amyloid beta A4 protein B 7 Homo sapiens Fragment: C-terminus, residues 761-767
Gene Name(s): APP Gene View A4 AD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.207
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 46.67 α = 90.00
b = 56.91 β = 106.53
c = 60.66 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2009-12-29
  • Released Date: 2010-06-02
  • Deposition author(s): Mardones, G.A., Rojas, A.L., Burgos, P.V., Dasilva, L.L.P., Prabhu, Y., Bonifacino, J.S., Hurley, J.H.

Revision History

  • Version 1_0: 2010-06-02

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-11-01

    Type: Refinement description