3DMM

Crystal structure of the CD8 alpha beta/H-2Dd complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.248

Literature

Macromolecules
Sequence Display for 3DMM

Classification: IMMUNE SYSTEM

Total Structure Weight: 80119.84

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 class I histocompatibility antigen, D-D alpha chain A 275 Mus musculus Fragment: Alpha-1,2,3 regions: Residues 26-299
Gene Name(s): H2-D1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2 microglobulin B 100 Mus musculus Fragment: Residues 21-119
Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Synthetic peptide P 10 synthetic
T-cell surface glycoprotein CD8 alpha chain C 166 Mus musculus Fragment: Ig-like V-type domain: Residues 28-149
Gene Name(s): Cd8a Lyt-2 Lyt2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
T-cell surface glycoprotein CD8 beta chain D 150 Mus musculus Fragment: Ig-like V-type domain: Residues 22-141
Gene Name(s): Cd8b Cd8b1 Ly-3 Lyt-3 Lyt3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.248
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 79.47 α = 90.00
b = 96.69 β = 90.00
c = 97.54 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2008-07-01
  • Released Date: 2009-07-14
  • Deposition author(s): Wang, R., Natarajan, K., Margulies, D.H.

Revision History

  • Version 1_0: 2009-07-14

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-10-25

    Type: Refinement description