3DBX

Structure of chicken CD1-2 with bound fatty acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 3DBX

Classification: IMMUNE SYSTEM

Total Structure Weight: 45460.87

Macromolecule Entities
Molecule Chains Length Organism Details
CD1-2 antigen A 289 Gallus gallus Fragment: ectodomain of chicken CD1-2, UNP residues 20-302
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B 99 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLM
Query on PLM

A PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.216
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 92.15 α = 90.00
b = 92.15 β = 90.00
c = 96.69 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2008-06-02
  • Released Date: 2008-11-25
  • Deposition author(s): Zajonc, D.M., Wilson, I.A.

Revision History

  • Version 1_0: 2008-11-25

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance