2WT1

Galectin domain of porcine adenovirus type 4 NADC-1 isolate fibre complexed with lacto-N-neo-tetraose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 2WT1

Classification: VIRAL PROTEIN

Total Structure Weight: 38856.85

Macromolecule Entities
Molecule Chains Length Organism Details
PUTATIVE FIBER PROTEIN A 343 Porcine mastadenovirus b Fragment: GALECTIN DOMAIN, RESIDUES 393-703
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BGC
Query on BGC

A BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

A BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO3
Query on NO3

A NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.188
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 95.42 α = 90.00
b = 38.79 β = 102.20
c = 84.40 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2009-09-10
  • Released Date: 2010-08-11
  • Deposition author(s): Guardado-Calvo, P., Munoz, E.M., Llamas-Saiz, A.L., Fox, G.C., Glasgow, J.N., van Raaij, M.J.

Revision History

  • Version 1_0: 2010-08-11

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2018-01-17

    Type: Database references