2VDO

Integrin AlphaIIbBeta3 Headpiece Bound to Fibrinogen Gamma chain peptide, HHLGGAKQAGDV


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.148

Literature

Macromolecules
Sequence Display for 2VDO

Classification: CELL ADHESION / IMMUNE SYSTEM

Total Structure Weight: 151730.16

Macromolecule Entities
Molecule Chains Length Organism Details
INTEGRIN ALPHA-IIB A 452 Homo sapiens Fragment: HEADPIECE, RESIDUES 32-483
Mutation: A282G
Gene Name(s): ITGA2B Gene View GP2B ITGAB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
INTEGRIN BETA-3 B 461 Homo sapiens Fragment: HEADPIECE, RESIDUES 27-487
Gene Name(s): ITGB3 Gene View GP3A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FIBRINOGEN, GAMMA POLYPEPTIDE C 12 Homo sapiens Fragment: GAMMA CHAIN C-TERMINAL PEPTIDE, RESIDUES 426-437
Gene Name(s): FGG Gene View PRO2061
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MONOCLONAL ANTIBODY 10E5 HEAVY CHAIN H 221 Mus musculus
MONOCLONAL ANTIBODY 10E5 LIGHT CHAIN L 214 Mus musculus

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

B ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.148
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 148.33 α = 90.00
b = 148.33 β = 90.00
c = 176.57 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2007-10-10
  • Released Date: 2008-09-02
  • Deposition author(s): Springer, T.A., Zhu, J., Xiao, T.

Revision History

  • Version 1_0: 2008-09-02

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_2: 2019-01-30

    Type: Data collection, Experimental preparation, Other

  • Version 1_3: 2019-02-06

    Type: Data collection, Experimental preparation