2RFX

Crystal Structure of HLA-B*5701, presenting the self peptide, LSSPVTKSF


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 2RFX

Classification: IMMUNE SYSTEM

Total Structure Weight: 44721.70

Macromolecule Entities
Molecule Chains Length Organism Details
HLA class I histocompatibility antigen, B-57 alpha chain A 275 Homo sapiens Gene Name(s): HLA-B Gene View HLAB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B 99 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LSSPVTKSF C 9 Homo sapiens Gene Name(s): IGKC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.209
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 64.84 α = 90.00
b = 49.03 β = 100.70
c = 70.67 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2007-10-02
  • Released Date: 2008-07-08
  • Deposition author(s): Archbold, J.K., Macdonald, W.A., Rossjohn, J., McCluskey, J.

Revision History

  • Version 1_0: 2008-07-08

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_2: 2017-10-25

    Type: Refinement description