2M9S

3D NMR structure of a complex between the amyloid beta peptide (1-40) and the polyphenol epsilon-viniferin glucoside


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 9
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 2M9S

Classification: PROTEIN FIBRIL

Total Structure Weight: 5569.07

Macromolecule Entities
Molecule Chains Length Organism Details
Amyloid beta A4 protein A 40 Homo sapiens Fragment: UNP residues 672-711
Gene Name(s): APP Gene View A4 AD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
23Y
Query on 23Y

A (2S,3S)-3-(3,5-dihydroxyphenyl)-2-(4-hydroxyphenyl)- 4-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro- 1-benzofuran-6-yl beta-D-glucopyranoside
POLYPHENOL EPSILON-VINIFERIN GLUCOSIDE (Synonym)
C34 H32 O11
NHYFNLFVNSLRES-YNVKLIFMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 9
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2013-06-19
  • Released Date: 2013-09-11
  • Deposition author(s): Monti, J., Richard, T.

Revision History

  • Version 1_0: 2013-09-11

    Type: Initial release