1RY2

Crystal structure of yeast acetyl-coenzyme A synthetase in complex with AMP

Structural Biology Knowledgebase: 1RY2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.199

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1RY2

Classification: LIGASE

Total Structure Weight: 73951.18

Macromolecule Entities
Molecule Chains Length Organism Details
acetyl-coenzyme A synthetase 1 A 663 Saccharomyces cerevisiae EC#: 6.2.1.1 IUBMB
Gene Name(s): ACS1 YAL054C FUN44
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.199
  • Space Group: P 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 107.13 α = 90.00
b = 107.13 β = 90.00
c = 54.79 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-19
  • Released Date: 2004-03-09
  • Deposition author(s): Jogl, G., Tong, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4