X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.0
Details 15 % 2-propanol, 10 % PEG4K, 0.1 M NaHEPES pH 8

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 42.57 α = 90
b = 80.4 β = 90
c = 91.31 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 6M -- 2017-02-04
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.67 23.45 99.3 -- -- -- 6.1 -- 36878 -- -- 19.29
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.67 1.7 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.67 23.45 -- 0.0 -- 36714 1829 98.8 -- 0.203 0.201 0.242 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.67 1.72 -- 144 2632 0.289 0.329 0.0 92.26
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 24.88
Anisotropic B[1][1] 1.5484
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -5.2124
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 3.664
RMS Deviations
Key Refinement Restraint Deviation
t_other_torsion 16.03
t_omega_torsion 3.0
t_bond_d 0.01
t_angle_deg 0.97
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.26
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2225
Nucleic Acid Atoms 0
Heterogen Atoms 46
Solvent Atoms 282

Software

Software
Software Name Purpose
BUSTER refinement version: 2.11.6
DIALS data scaling
PDB_EXTRACT data extraction version: 3.25
DIALS data reduction
PHASER phasing