X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 289.0
Details 0.1 M Tris/Bicine pH 8.5, 0.06 M Divalent Cations, 30% PEG550MME/PEG20000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 73.22 α = 88.36
b = 77.21 β = 64.2
c = 83.11 γ = 75.29
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2017-04-20
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.69 74.35 97.2 -- -- -- 6.9 -- 171761 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.69 1.72 95.8 -- -- 3.6 6.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.69 21.971 -- 1.97 -- 171508 2504 97.06 -- 0.1839 0.1834 0.2121 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.69 1.7225 -- 129 9264 0.2683 0.3093 -- 95.0
X Ray Diffraction 1.7225 1.7577 -- 130 9232 0.2628 0.3294 -- 96.0
X Ray Diffraction 1.7577 1.7959 -- 133 9301 0.246 0.2904 -- 96.0
X Ray Diffraction 1.7959 1.8376 -- 133 9297 0.2436 0.2957 -- 96.0
X Ray Diffraction 1.8376 1.8835 -- 153 9222 0.2393 0.272 -- 96.0
X Ray Diffraction 1.8835 1.9344 -- 146 9335 0.2342 0.3027 -- 96.0
X Ray Diffraction 1.9344 1.9913 -- 128 9381 0.2296 0.254 -- 97.0
X Ray Diffraction 1.9913 2.0556 -- 142 9298 0.2213 0.2491 -- 97.0
X Ray Diffraction 2.0556 2.129 -- 134 9403 0.2194 0.2294 -- 97.0
X Ray Diffraction 2.129 2.2141 -- 129 9330 0.2061 0.2447 -- 96.0
X Ray Diffraction 2.2141 2.3148 -- 135 9407 0.2025 0.2247 -- 97.0
X Ray Diffraction 2.3148 2.4367 -- 138 9465 0.1928 0.2217 -- 98.0
X Ray Diffraction 2.4367 2.5891 -- 149 9429 0.1813 0.2047 -- 98.0
X Ray Diffraction 2.5891 2.7887 -- 169 9481 0.1843 0.2049 -- 98.0
X Ray Diffraction 2.7887 3.0686 -- 117 9505 0.1845 0.2013 -- 98.0
X Ray Diffraction 3.0686 3.5111 -- 139 9543 0.1756 0.2027 -- 99.0
X Ray Diffraction 3.5111 4.4177 -- 148 9546 0.1464 0.1693 -- 99.0
X Ray Diffraction 4.4177 21.973 -- 152 9565 0.1574 0.2004 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.056
f_bond_d 0.01
f_angle_d 1.069
f_dihedral_angle_d 16.359
f_plane_restr 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9883
Nucleic Acid Atoms 0
Heterogen Atoms 340
Solvent Atoms 950

Software

Software
Software Name Purpose
PHENIX refinement version: (1.12_2829: ???)
DIALS data reduction
Aimless data scaling
PHASER phasing