X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 4.5
Temperature 297.0
Details 8% Peg 4000, 0.1M Acetate pH4.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 38.85 α = 90.05
b = 43.28 β = 95.67
c = 58.32 γ = 93.77
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2017-04-30
Diffraction Radiation
Monochromator Protocol
si SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04 0.97950 Diamond I04

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.61 34.52 90.7 0.035 -- -- 2.1 -- 44332 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.61 1.65 53.4 0.395 -- 1.2 1.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.61 34.0 -- 1.96 -- 43746 2080 89.49 -- 0.1959 0.1938 0.2394 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.6097 1.6472 -- 81 1502 0.4089 0.431 -- 49.0
X Ray Diffraction 1.6472 1.6884 -- 87 1912 0.3776 0.4302 -- 61.0
X Ray Diffraction 1.6884 1.734 -- 138 2530 0.3654 0.3953 -- 82.0
X Ray Diffraction 1.734 1.7851 -- 158 2801 0.3511 0.387 -- 91.0
X Ray Diffraction 1.7851 1.8427 -- 170 2894 0.3067 0.3791 -- 93.0
X Ray Diffraction 1.8427 1.9085 -- 142 2926 0.285 0.3406 -- 95.0
X Ray Diffraction 1.9085 1.9849 -- 155 2958 0.2536 0.2787 -- 95.0
X Ray Diffraction 1.9849 2.0753 -- 128 3013 0.2484 0.296 -- 96.0
X Ray Diffraction 2.0753 2.1847 -- 141 2981 0.2239 0.2994 -- 97.0
X Ray Diffraction 2.1847 2.3215 -- 135 3030 0.215 0.2701 -- 97.0
X Ray Diffraction 2.3215 2.5007 -- 156 2989 0.2015 0.2584 -- 97.0
X Ray Diffraction 2.5007 2.7523 -- 155 3005 0.1987 0.2576 -- 97.0
X Ray Diffraction 2.7523 3.1503 -- 136 3058 0.2039 0.2544 -- 98.0
X Ray Diffraction 3.1503 3.9681 -- 133 3037 0.1573 0.2007 -- 97.0
X Ray Diffraction 3.9681 34.5319 -- 165 3030 0.1368 0.1699 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.077
f_dihedral_angle_d 21.456
f_angle_d 1.474
f_bond_d 0.015
f_plane_restr 0.01
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1442
Nucleic Acid Atoms 1054
Heterogen Atoms 0
Solvent Atoms 313

Software

Software
Software Name Purpose
PHENIX refinement version: (1.12_2829: ???)
DIALS data reduction
Aimless data scaling
PHASER phasing