X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5.6
Temperature 277.0
Details 23%(w/v) PEG3350, 3%(v/v) glcyerol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 42.11 α = 90
b = 77.03 β = 90
c = 90.44 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M KIRKPATRICK-BAEZ 2015-03-12
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.65 42.11 100.0 -- 0.07 -- 6.5 -- 36153 -- 0.0 22.2
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.65 1.9 100.0 -- 0.354 4.6 6.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.65 22.92 -- 0.0 -- 36077 1785 99.7 -- 0.18 0.179 0.208 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.65 1.7 -- 153 2699 0.2236 0.2372 -- 97.52
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 24.91
Anisotropic B[1][1] 0.0394
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -2.0353
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.9959
RMS Deviations
Key Refinement Restraint Deviation
t_angle_deg 0.99
t_other_torsion 14.61
t_omega_torsion 3.59
t_bond_d 0.01
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.21
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2414
Nucleic Acid Atoms 0
Heterogen Atoms 27
Solvent Atoms 204

Software

Software
Software Name Purpose
BUSTER refinement version: 2.11.7
PDB_EXTRACT data extraction version: 3.22
XDS data reduction
Aimless data scaling
AMoRE phasing