X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Evaporation
pH 7.2
Temperature 293.0
Details 0.1 M HEPES (pH 7.5), and 15% PEG3350 (v/v)

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 72.19 α = 90
b = 101.24 β = 90
c = 303.56 γ = 90
Symmetry
Space Group P 2 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 LR-Design detector positioner 2016-03-23
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.6 50 94.6 0.092 -- -- 4.3 -- 65656 -- -- 48.71
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.6 2.69 72.1 0.497 -- -- 3.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.598 48.021 -- 1.35 -- 65587 3300 94.14 -- 0.1805 0.1781 0.2261 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.5979 2.635 -- 94 1514 0.2829 0.3474 -- 57.0
X Ray Diffraction 2.635 2.6744 -- 98 2004 0.2712 0.3333 -- 73.0
X Ray Diffraction 2.6744 2.7162 -- 101 2184 0.2555 0.3361 -- 81.0
X Ray Diffraction 2.7162 2.7607 -- 116 2359 0.2593 0.3146 -- 85.0
X Ray Diffraction 2.7607 2.8083 -- 122 2461 0.2488 0.2914 -- 91.0
X Ray Diffraction 2.8083 2.8593 -- 134 2557 0.245 0.3359 -- 94.0
X Ray Diffraction 2.8593 2.9143 -- 152 2618 0.2498 0.3265 -- 97.0
X Ray Diffraction 2.9143 2.9738 -- 144 2714 0.236 0.3053 -- 99.0
X Ray Diffraction 2.9738 3.0385 -- 125 2717 0.233 0.2592 -- 99.0
X Ray Diffraction 3.0385 3.1091 -- 144 2690 0.2241 0.3049 -- 99.0
X Ray Diffraction 3.1091 3.1869 -- 143 2707 0.2194 0.2636 -- 99.0
X Ray Diffraction 3.1869 3.273 -- 147 2678 0.2162 0.2522 -- 98.0
X Ray Diffraction 3.273 3.3693 -- 144 2714 0.2079 0.2344 -- 100.0
X Ray Diffraction 3.3693 3.478 -- 136 2739 0.1944 0.2691 -- 100.0
X Ray Diffraction 3.478 3.6023 -- 149 2743 0.1824 0.2464 -- 100.0
X Ray Diffraction 3.6023 3.7465 -- 140 2733 0.1672 0.258 -- 100.0
X Ray Diffraction 3.7465 3.9169 -- 147 2726 0.1588 0.1912 -- 99.0
X Ray Diffraction 3.9169 4.1233 -- 162 2715 0.1601 0.2064 -- 99.0
X Ray Diffraction 4.1233 4.3815 -- 134 2750 0.1434 0.1997 -- 99.0
X Ray Diffraction 4.3815 4.7195 -- 146 2729 0.1382 0.1819 -- 98.0
X Ray Diffraction 4.7195 5.1939 -- 156 2753 0.1372 0.1885 -- 98.0
X Ray Diffraction 5.1939 5.9443 -- 151 2797 0.1584 0.2112 -- 100.0
X Ray Diffraction 5.9443 7.4847 -- 152 2800 0.169 0.2012 -- 99.0
X Ray Diffraction 7.4847 48.0289 -- 163 2885 0.1404 0.1594 -- 96.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.064
f_bond_d 0.009
f_dihedral_angle_d 23.463
f_angle_d 1.053
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11613
Nucleic Acid Atoms 1562
Heterogen Atoms 45
Solvent Atoms 190

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11.1_2575: ???)
HKL-2000 data scaling
PDB_EXTRACT data extraction version: 3.22
HKL-2000 data reduction
PHENIX phasing