X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 293.0
Details Tris-HCl pH 8.0 100 mM PEG 2000 MME 19% NaCl 100 mM

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 74.84 α = 90
b = 99.2 β = 90
c = 207.26 γ = 90
Symmetry
Space Group P 21 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2014-09-17
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97857 SOLEIL PROXIMA 1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.32 19.97 98.6 0.23 -- -- 4.4 -- 66284 -- -- 30.26
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.32 2.38 87.5 1.796 -- 0.9 4.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.32 19.97 -- -- -- 66234 6301 98.58 -- 0.204 0.2022 0.2373 Random selection
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.3244 2.3507 -- 154 3025 0.3539 0.3562 -- 75.0
X Ray Diffraction 2.3507 2.3784 -- 229 3989 0.3399 0.412 -- 100.0
X Ray Diffraction 2.3784 2.4073 -- 181 4092 0.3448 0.3483 -- 99.0
X Ray Diffraction 2.4073 2.4377 -- 216 3982 0.3419 0.4113 -- 98.0
X Ray Diffraction 2.4377 2.4697 -- 228 4014 0.3171 0.3264 -- 99.0
X Ray Diffraction 2.4697 2.5035 -- 192 4043 0.3025 0.3386 -- 100.0
X Ray Diffraction 2.5035 2.5392 -- 206 4082 0.2993 0.3398 -- 100.0
X Ray Diffraction 2.5392 2.577 -- 219 4033 0.2849 0.3155 -- 100.0
X Ray Diffraction 2.577 2.6172 -- 209 4035 0.2847 0.3119 -- 100.0
X Ray Diffraction 2.6172 2.66 -- 226 4042 0.2767 0.2971 -- 100.0
X Ray Diffraction 2.66 2.7058 -- 204 4021 0.2621 0.2914 -- 99.0
X Ray Diffraction 2.7058 2.7549 -- 183 4120 0.255 0.284 -- 99.0
X Ray Diffraction 2.7549 2.8077 -- 240 3941 0.2476 0.2659 -- 99.0
X Ray Diffraction 2.8077 2.8649 -- 195 4071 0.239 0.2858 -- 99.0
X Ray Diffraction 2.8649 2.927 -- 209 3996 0.2395 0.2523 -- 99.0
X Ray Diffraction 2.927 2.9948 -- 207 4041 0.2446 0.2528 -- 99.0
X Ray Diffraction 2.9948 3.0695 -- 208 3993 0.2221 0.243 -- 99.0
X Ray Diffraction 3.0695 3.1522 -- 241 4030 0.2216 0.2885 -- 99.0
X Ray Diffraction 3.1522 3.2445 -- 202 4033 0.2039 0.2437 -- 100.0
X Ray Diffraction 3.2445 3.3488 -- 206 4040 0.1885 0.2203 -- 100.0
X Ray Diffraction 3.3488 3.4679 -- 192 4074 0.1841 0.2468 -- 99.0
X Ray Diffraction 3.4679 3.606 -- 191 4067 0.1708 0.2411 -- 99.0
X Ray Diffraction 3.606 3.769 -- 214 4035 0.1605 0.1866 -- 99.0
X Ray Diffraction 3.769 3.9663 -- 246 4012 0.1537 0.1859 -- 100.0
X Ray Diffraction 3.9663 4.2126 -- 224 4011 0.1383 0.1847 -- 100.0
X Ray Diffraction 4.2126 4.5344 -- 215 4043 0.1329 0.183 -- 100.0
X Ray Diffraction 4.5344 4.9842 -- 187 4134 0.126 0.144 -- 100.0
X Ray Diffraction 4.9842 5.6908 -- 209 3997 0.1433 0.1825 -- 99.0
X Ray Diffraction 5.6908 7.1156 -- 226 4037 0.1877 0.1938 -- 100.0
X Ray Diffraction 7.1156 19.975 -- 242 3995 0.1734 0.2036 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_angle_d 0.904
f_chiral_restr 0.041
f_bond_d 0.004
f_dihedral_angle_d 15.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11000
Nucleic Acid Atoms 0
Heterogen Atoms 224
Solvent Atoms 754

Software

Software
Software Name Purpose
PHENIX refinement version: dev_1980
XDS data reduction
XDS data scaling
PHASER phasing