X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.5
Temperature 295.0
Details 0.1 M MES, pH 6.5, 0.1 M NaCl, 1.45 M ammonium sulfate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 211.36 α = 90
b = 211.36 β = 90
c = 211.36 γ = 90
Symmetry
Space Group F 4 3 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 6M -- 2013-07-22
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) 1.03320 PETRA III, EMBL c/o DESY P14 (MX2)

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.35 120 99.2 0.134 -- -- 6.2 -- 7571 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.35 19.709 -- 1.33 -- 6047 333 97.41 -- 0.2868 0.2857 0.3022 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.3502 4.2141 -- 153 2719 0.3523 0.3496 -- 95.0
X Ray Diffraction 4.2141 19.7095 -- 180 2995 0.264 0.2889 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.002
f_dihedral_angle_d 9.322
f_bond_d 0.001
f_angle_d 0.313
f_chiral_restr 0.03
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2385
Nucleic Acid Atoms 0
Heterogen Atoms 29
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: (1.12_2829: ???)
XDS data reduction
Aimless data scaling
MOLREP phasing