X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.15
Details 100 mM MES pH 5.6-6.3 20-30 % PEG4000 25 mM BOG

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.65 α = 90
b = 70.21 β = 90
c = 74.57 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 90
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2016-01-08
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA 0.97863 SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 50 100.0 -- -- -- 12.9 -- 31220 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.8 1.85 99.9 -- -- 1.76 12.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.8 48.72 -- -- -- 31220 2350 99.98 -- 0.1909 0.18773 0.23332 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.847 -- 168 2236 0.334 0.387 -- 99.92
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 34.787
Anisotropic B[1][1] 2.7
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.87
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.83
RMS Deviations
Key Refinement Restraint Deviation
r_mcangle_it 4.352
r_bond_other_d 0.005
r_mcangle_other 4.351
r_mcbond_other 3.345
r_dihedral_angle_2_deg 34.371
r_dihedral_angle_1_deg 5.554
r_mcbond_it 3.351
r_scbond_other 4.056
r_scbond_it 4.057
r_gen_planes_refined 0.011
r_long_range_B_refined 7.867
r_chiral_restr 0.124
r_scangle_other 5.947
r_long_range_B_other 7.867
r_angle_refined_deg 1.958
r_dihedral_angle_4_deg 21.543
r_dihedral_angle_3_deg 16.444
r_angle_other_deg 1.691
r_bond_refined_d 0.02
r_gen_planes_other 0.002
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2649
Nucleic Acid Atoms 0
Heterogen Atoms 84
Solvent Atoms 134

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0103
XDS data reduction
XSCALE data scaling
PHASER phasing