X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 293.0
Details Tris-HCl pH 8.0 100 mM PEG 2000 MME 17 % NaCl 100 mM

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 98.68 α = 90
b = 74.83 β = 90.53
c = 206.64 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2014-09-17
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97857 SOLEIL PROXIMA 1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.29 49.34 99.1 0.158 -- -- 3.4 -- 134100 -- -- 31.6
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.29 2.33 90.9 1.162 -- 1.0 3.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.29 49.34 -- -- -- 134021 12853 98.96 -- 0.2067 0.2051 0.238 Random selection
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.2938 2.3199 -- 401 7046 0.3426 0.3433 -- 86.0
X Ray Diffraction 2.3199 2.3472 -- 390 8479 0.3295 0.3256 -- 99.0
X Ray Diffraction 2.3472 2.3758 -- 373 8336 0.319 0.3569 -- 100.0
X Ray Diffraction 2.3758 2.4059 -- 472 8383 0.327 0.3334 -- 99.0
X Ray Diffraction 2.4059 2.4375 -- 449 8206 0.3244 0.3652 -- 99.0
X Ray Diffraction 2.4375 2.4709 -- 393 8473 0.3099 0.3454 -- 100.0
X Ray Diffraction 2.4709 2.5062 -- 494 8238 0.2995 0.3172 -- 100.0
X Ray Diffraction 2.5062 2.5436 -- 410 8352 0.2863 0.3626 -- 100.0
X Ray Diffraction 2.5436 2.5834 -- 440 8467 0.2856 0.3395 -- 99.0
X Ray Diffraction 2.5834 2.6257 -- 426 8204 0.2766 0.3313 -- 99.0
X Ray Diffraction 2.6257 2.671 -- 393 8487 0.2742 0.2804 -- 99.0
X Ray Diffraction 2.671 2.7195 -- 426 8276 0.2548 0.289 -- 100.0
X Ray Diffraction 2.7195 2.7718 -- 401 8393 0.2554 0.2972 -- 100.0
X Ray Diffraction 2.7718 2.8284 -- 412 8302 0.2524 0.2389 -- 99.0
X Ray Diffraction 2.8284 2.8899 -- 421 8464 0.246 0.3089 -- 99.0
X Ray Diffraction 2.8899 2.9571 -- 395 8226 0.2345 0.278 -- 99.0
X Ray Diffraction 2.9571 3.0311 -- 477 8348 0.2247 0.2503 -- 100.0
X Ray Diffraction 3.0311 3.113 -- 376 8485 0.2279 0.2896 -- 99.0
X Ray Diffraction 3.113 3.2046 -- 464 8187 0.2092 0.2601 -- 99.0
X Ray Diffraction 3.2046 3.308 -- 369 8437 0.2072 0.2588 -- 99.0
X Ray Diffraction 3.308 3.4262 -- 515 8276 0.2031 0.2376 -- 99.0
X Ray Diffraction 3.4262 3.5634 -- 397 8372 0.1755 0.2288 -- 99.0
X Ray Diffraction 3.5634 3.7255 -- 459 8284 0.1648 0.2008 -- 99.0
X Ray Diffraction 3.7255 3.9218 -- 433 8331 0.1587 0.1911 -- 99.0
X Ray Diffraction 3.9218 4.1674 -- 435 8373 0.1428 0.183 -- 100.0
X Ray Diffraction 4.1674 4.489 -- 461 8345 0.1378 0.1792 -- 100.0
X Ray Diffraction 4.489 4.9404 -- 447 8331 0.1266 0.1643 -- 100.0
X Ray Diffraction 4.9404 5.6544 -- 397 8406 0.1472 0.1517 -- 100.0
X Ray Diffraction 5.6544 7.1205 -- 479 8332 0.1852 0.2165 -- 100.0
X Ray Diffraction 7.1205 49.3513 -- 448 8220 0.1832 0.1928 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 13.734
f_plane_restr 0.004
f_bond_d 0.005
f_chiral_restr 0.042
f_angle_d 0.912
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 21990
Nucleic Acid Atoms 0
Heterogen Atoms 365
Solvent Atoms 1166

Software

Software
Software Name Purpose
PHENIX refinement version: dev_1980
XDS data reduction
Aimless data scaling
PHASER phasing