ELECTRON MICROSCOPY Experimental Data



Virus Particulars
Virus Host Category Virus Host Species Virus Host Growth Cell Virus Type Virus Isolate ICTVDB ID
-- Homo sapiens -- VIRION STRAIN --
EM Sample
Sample Vitrification Details Blot for 5 seconds before plunging into liquid ethane (GATAN CRYOPLUNGE 3).
Sample Aggregation State PARTICLE
Sample Reconstruction Method SINGLE PARTICLE
Name of Sample Zika virus
EM Data Acquisition
Date of Experiment --
Temperature (Kelvin) --
Microscope Model FEI TITAN KRIOS
Detector Type GATAN K2 SUMMIT (4k x 4k)
Minimum Defocus (nm) 1000.0
Maximum Defocus (nm) 2500.0
Minimum Tilt Angle (degrees) --
Maximum Tilt Angle (degrees) --
Nominal CS 2.7
Imaging Mode BRIGHT FIELD
Electron Dose (electrons per Å**-2) 23.0
Illumination Mode FLOOD BEAM
Nominal Magnification 14000
Calibrated Magnification --
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 300
Imaging Details --
3D Reconstruction
Software Package(s) jspr
Reconstruction Method(s) --
EM Image Reconstruction Statistics
Number of Particles 11842
Other Details Soft mark was applied to the even/odd map before FSC calculation.
Effective Resolution 3.8
EM Map-Model Fitting and Refinement
Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Fitting Software
REAL AB INITIO MODEL T = Tmap + weight * TrestraintsT = Tmap + weight * Trestraints 150.0 -- --