X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 286.0
Details 0.2M ammonium sulfate -- 30%(w/v) PEG 8000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 59.76 α = 90
b = 107.99 β = 90
c = 126.42 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2015-02-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I02 0.97949 Diamond I02

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.7 59.8 99.8 -- -- -- 9.4 -- 86007 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.7 1.72 62.7 -- -- 0.5 10.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.73 40.29 -- 1.34 -- 86007 4228 99.89 -- 0.1998 0.1983 0.2278 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.73 1.7497 -- 145 2722 0.198 0.228 -- 100.0
X Ray Diffraction 1.8902 1.9184 -- 133 2690 0.2864 0.2976 -- 100.0
X Ray Diffraction 1.9184 1.9484 -- 141 2694 0.2952 0.32 -- 100.0
X Ray Diffraction 1.9484 1.9803 -- 119 2695 0.2714 0.3279 -- 100.0
X Ray Diffraction 1.9803 2.0145 -- 129 2701 0.2552 0.3087 -- 100.0
X Ray Diffraction 2.0145 2.0511 -- 170 2711 0.2559 0.3004 -- 100.0
X Ray Diffraction 2.0511 2.0906 -- 132 2682 0.2601 0.2754 -- 100.0
X Ray Diffraction 2.0906 2.1332 -- 138 2728 0.2533 0.3197 -- 100.0
X Ray Diffraction 2.1332 2.1796 -- 129 2708 0.2481 0.2935 -- 100.0
X Ray Diffraction 2.1796 2.2303 -- 118 2711 0.238 0.2725 -- 100.0
X Ray Diffraction 2.2303 2.2861 -- 153 2719 0.2112 0.2819 -- 100.0
X Ray Diffraction 2.2861 2.3479 -- 148 2698 0.2132 0.27 -- 100.0
X Ray Diffraction 2.3479 2.417 -- 128 2731 0.1966 0.2207 -- 100.0
X Ray Diffraction 2.417 2.495 -- 160 2706 0.1974 0.2575 -- 100.0
X Ray Diffraction 2.495 2.5841 -- 150 2715 0.1979 0.2482 -- 100.0
X Ray Diffraction 2.5841 2.6876 -- 137 2739 0.187 0.2073 -- 100.0
X Ray Diffraction 2.6876 2.8099 -- 146 2724 0.1798 0.2138 -- 100.0
X Ray Diffraction 2.8099 2.958 -- 118 2763 0.1811 0.2122 -- 100.0
X Ray Diffraction 2.958 3.1432 -- 142 2760 0.1862 0.2082 -- 100.0
X Ray Diffraction 3.1432 3.3858 -- 145 2750 0.1701 0.1892 -- 100.0
X Ray Diffraction 3.3858 3.7263 -- 140 2782 0.1659 0.2055 -- 100.0
X Ray Diffraction 3.7263 4.265 -- 166 2758 0.1424 0.1567 -- 100.0
X Ray Diffraction 4.265 5.3714 -- 125 2845 0.133 0.1433 -- 100.0
X Ray Diffraction 5.3714 40.29 -- 162 2935 0.1727 0.1852 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 38.7901
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.059
f_angle_d 1.062
f_plane_restr 0.008
f_bond_d 0.009
f_dihedral_angle_d 12.559
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5300
Nucleic Acid Atoms 0
Heterogen Atoms 398
Solvent Atoms 424

Software

Software
Software Name Purpose
PHENIX refinement
PDB_EXTRACT data extraction version: 3.20
xia2 data reduction
xia2 data scaling
PHASER phasing