X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 8
Details 0.1M TRIS, PH=8.0, 0.2M MGCL2, 17% PEG6000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 91.24 α = 90
b = 157.58 β = 90
c = 55.18 γ = 90
Symmetry
Space Group P 21 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M DYNAMICALLY BENDABLE MIRRORS 2015-05-27
Diffraction Radiation
Monochromator Protocol
SI(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA -- SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.95 47.2 100.0 -- 0.12 -- 8.3 -- 58918 -- -3.0 29.49
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.95 2.0 100.0 -- 1.17 2.0 8.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.95 45.522 -- 1.36 -- 58873 2937 99.96 -- 0.1737 0.1719 0.2071 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.95 1.982 -- 141 2635 0.2383 0.2747 -- 100.0
X Ray Diffraction 1.982 2.0161 -- 127 2618 0.227 0.2913 -- 100.0
X Ray Diffraction 2.0161 2.0528 -- 135 2643 0.2206 0.2829 -- 100.0
X Ray Diffraction 2.0528 2.0923 -- 160 2600 0.2164 0.2625 -- 100.0
X Ray Diffraction 2.0923 2.135 -- 140 2651 0.2101 0.2733 -- 100.0
X Ray Diffraction 2.135 2.1814 -- 143 2577 0.1925 0.2465 -- 100.0
X Ray Diffraction 2.1814 2.2322 -- 139 2657 0.1911 0.2393 -- 100.0
X Ray Diffraction 2.2322 2.288 -- 133 2645 0.1782 0.2292 -- 100.0
X Ray Diffraction 2.288 2.3498 -- 151 2607 0.1822 0.2359 -- 100.0
X Ray Diffraction 2.3498 2.419 -- 142 2650 0.1784 0.2519 -- 100.0
X Ray Diffraction 2.419 2.4971 -- 150 2630 0.174 0.1871 -- 100.0
X Ray Diffraction 2.4971 2.5863 -- 111 2657 0.1656 0.2124 -- 100.0
X Ray Diffraction 2.5863 2.6898 -- 121 2673 0.1714 0.2145 -- 100.0
X Ray Diffraction 2.6898 2.8122 -- 122 2677 0.1787 0.2554 -- 100.0
X Ray Diffraction 2.8122 2.9605 -- 144 2663 0.1787 0.2304 -- 100.0
X Ray Diffraction 2.9605 3.1459 -- 123 2692 0.1816 0.2175 -- 100.0
X Ray Diffraction 3.1459 3.3887 -- 149 2657 0.1803 0.2231 -- 100.0
X Ray Diffraction 3.3887 3.7296 -- 131 2716 0.159 0.1854 -- 100.0
X Ray Diffraction 3.7296 4.269 -- 153 2706 0.142 0.179 -- 100.0
X Ray Diffraction 4.269 5.3771 -- 151 2725 0.1354 0.1623 -- 100.0
X Ray Diffraction 5.3771 45.5344 -- 171 2857 0.1841 0.1798 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 34.1
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.008
f_angle_d 1.045
f_plane_restr 0.004
f_chiral_restr 0.042
f_dihedral_angle_d 13.335
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5464
Nucleic Acid Atoms 0
Heterogen Atoms 20
Solvent Atoms 434

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE: 1.9_1692)
XDS data reduction
XSCALE data scaling
PHASER phasing