X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 292.0
Details mixing equal volumes of protein (8mg/ml) and reservoir solution (4-6 % PEG 6000 and 0.1 M Tris pH 8.0), VAPOR DIFFUSION, HANGING DROP, temperature 292K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 136.03 α = 90
b = 487.15 β = 90
c = 276.46 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL PSI PILATUS 6M -- 2014-02-20
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I02 -- Diamond I02

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.4 56.5 62.2 -- 0.101 -- 4.1 -- 78411 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MIRAS 3.41 56.6 -- -- -- 74060 3915 62.16 -- 0.23989 0.23746 0.28546 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.406 3.494 -- 14 209 0.345 0.541 -- 2.44
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 114.274
Anisotropic B[1][1] 0.05
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.28
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.23
RMS Deviations
Key Refinement Restraint Deviation
r_mcbond_other 8.241
r_gen_planes_refined 0.005
r_angle_refined_deg 1.548
r_dihedral_angle_1_deg 7.269
r_dihedral_angle_2_deg 32.234
r_mcbond_it 8.241
r_scbond_other 8.493
r_mcangle_other 13.677
r_long_range_B_other 25.39
r_angle_other_deg 0.846
r_gen_planes_other 0.002
r_chiral_restr 0.073
r_dihedral_angle_4_deg 15.7
r_bond_refined_d 0.012
r_mcangle_it 13.706
r_long_range_B_refined 25.39
r_scbond_it 8.508
r_dihedral_angle_3_deg 17.385
r_bond_other_d 0.006
r_scangle_other 14.656
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 22697
Nucleic Acid Atoms 0
Heterogen Atoms 119
Solvent Atoms 0

Software

Software
Software Name Purpose
SHARP phasing
REFMAC refinement version: 5.8.0073
MOSFLM data reduction
SCALA data scaling