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Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
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Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
4QTR
Computational design of co-assembling protein-DNA nanowires
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
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FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly 1 (gz) (A+S)
Biological Assembly 2 (gz) (A+S)
X-RAY DIFFRACTION Experimental Data & Validation
X-ray Experimental Help
Crystallization
Crystalization Experiments
pH
7
Temperature
298.0
Details
800 mM, NaCl, 0.2 M Potassium thiocyanate, 20% w/v polyethylene glycerol 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Data
Unit Cell
Length (Å)
Angle (°)
a = 90.1
α = 90
b = 90.1
β = 90
c = 158.92
γ = 90
Symmetry
Space Group
P 42 2 2
Diffraction
Diffraction Experiment
ID #
Data Collection Temperature
1
100
Diffraction Detector
Detector
Diffraction Type
Details
Collection Date
PIXEL
DECTRIS PILATUS 6M
--
2014-04-23
Diffraction Radiation
Monochromator
Protocol
SI 111
SINGLE WAVELENGTH
Diffraction Detector Source
Source
Type
Wavelength List
Synchrotron Site
Beamline
SYNCHROTRON
SSRL BEAMLINE BL12-2
--
SSRL
BL12-2
Data Collection
Overall
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
R Sym I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
3.1
39.2
--
--
0.022
--
10.7
--
15510
--
--
--
High Resolution Shell
Resolution (High)
Resolution (Low)
Percent Possible (All)
R Merge I (Observed)
R-Sym I (Observed)
Mean I Over Sigma (Observed)
Redundancy
Number Unique Reflections (All)
2.86
3.02
88.5
--
6.972
--
9.7
--
Refinement
Statistics
Structure Solution Method
Refinement High Resolution
Refinement Low Resolution
Cut-off Sigma (I)
Cut-off Sigma (F)
Number of Reflections (All)
Number of Reflections (Observed)
Number of Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (All)
R-Factor (Observed)
R-Work
R-Free
R-Free Selection Details
MOLECULAR REPLACEMENT
3.2
36.35
--
1.35
--
11351
1136
99.8
--
0.27
0.264
0.322
--
High Resolution Shell
Refinement method
Shell Resolution (High)
Shell Resolution (Low)
# of Reflections (Observed)
# of Reflections (R-Free)
# of Reflections (R-Work)
R-Factor (R-Work)
R-Factor (R-Free)
R-Factor (R-Free Error)
Percent Reflections (Observed)
X Ray Diffraction
3.2003
3.3459
--
137
1237
0.399
0.4943
--
100.0
X Ray Diffraction
3.3459
3.5222
--
138
1235
0.3392
0.4152
--
99.0
X Ray Diffraction
3.5222
3.7426
--
138
1250
0.3612
0.4099
--
100.0
X Ray Diffraction
3.7426
4.0313
--
139
1246
0.3294
0.3749
--
100.0
X Ray Diffraction
4.0313
4.4363
--
141
1268
0.2974
0.3282
--
100.0
X Ray Diffraction
4.4363
5.0768
--
143
1287
0.2834
0.356
--
100.0
X Ray Diffraction
5.0768
6.3905
--
145
1304
0.2959
0.3307
--
100.0
X Ray Diffraction
6.3905
36.3554
--
155
1388
0.2029
0.2722
--
100.0
RMS Deviations
Key
Refinement Restraint Deviation
f_chiral_restr
0.061
f_dihedral_angle_d
26.745
f_plane_restr
0.01
f_bond_d
0.012
f_angle_d
1.32
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms
Numbers
Protein Atoms
1610
Nucleic Acid Atoms
1293
Heterogen Atoms
0
Solvent Atoms
0
Software
Software
Software Name
Purpose
CrystalClear
data collection
PHASES
phasing
PHENIX
refinement version: (phenix.refine: 1.9_1692)
DENZO
data reduction
SCALA
data scaling