POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4Q5S
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.7
    Temperature 300.0
    Details crystallization solution [100 mM Tris-HCl, pH 8.7, 200 mM KCl, 50 mM MgCl2, 10 mM Spermine tetra HCl and 10% PEG 4000], VAPOR DIFFUSION, HANGING DROP, temperature 300K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 187.09 α = 90
    b = 102.07 β = 98.14
    c = 297.26 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 270
    Collection Date 2013-06-05
     
    Diffraction Radiation
    Monochromator Rh coated Si
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CHESS BEAMLINE F1
    Wavelength List 0.918
    Site CHESS
    Beamline F1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 3
    Resolution(Low) 50
    Number Reflections(All) 273453
    Number Reflections(Observed) 107824
    Percent Possible(Observed) 94.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.0
    Resolution(Low) 41.977
    Cut-off Sigma(F) 1.38
    Number of Reflections(all) 273453
    Number of Reflections(Observed) 106154
    Number of Reflections(R-Free) 1854
    Percent Reflections(Observed) 95.34
    R-Factor(Observed) 0.2698
    R-Work 0.2694
    R-Free 0.2938
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0
    Shell Resolution(Low) 3.0811
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 7199
    R-Factor(R-Work) 0.4222
    R-Factor(R-Free) 0.429
    Percent Reflections(Observed) 86.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0811
    Shell Resolution(Low) 3.1717
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 7547
    R-Factor(R-Work) 0.4043
    R-Factor(R-Free) 0.4103
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1717
    Shell Resolution(Low) 3.2741
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 7791
    R-Factor(R-Work) 0.3971
    R-Factor(R-Free) 0.4118
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2741
    Shell Resolution(Low) 3.3911
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 7931
    R-Factor(R-Work) 0.3705
    R-Factor(R-Free) 0.4046
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3911
    Shell Resolution(Low) 3.5268
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 8064
    R-Factor(R-Work) 0.3424
    R-Factor(R-Free) 0.367
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5268
    Shell Resolution(Low) 3.6872
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 8099
    R-Factor(R-Work) 0.3291
    R-Factor(R-Free) 0.3512
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6872
    Shell Resolution(Low) 3.8814
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 8103
    R-Factor(R-Work) 0.3009
    R-Factor(R-Free) 0.2961
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8814
    Shell Resolution(Low) 4.1244
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 8171
    R-Factor(R-Work) 0.2695
    R-Factor(R-Free) 0.2818
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1244
    Shell Resolution(Low) 4.4426
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 8235
    R-Factor(R-Work) 0.2524
    R-Factor(R-Free) 0.2764
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4426
    Shell Resolution(Low) 4.889
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 8207
    R-Factor(R-Work) 0.2345
    R-Factor(R-Free) 0.2731
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.889
    Shell Resolution(Low) 5.5951
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 8258
    R-Factor(R-Work) 0.2378
    R-Factor(R-Free) 0.2684
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.5951
    Shell Resolution(Low) 7.0438
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 8285
    R-Factor(R-Work) 0.249
    R-Factor(R-Free) 0.3081
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.0438
    Shell Resolution(Low) 41.9814
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 8410
    R-Factor(R-Work) 0.1788
    R-Factor(R-Free) 0.1972
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.041
    f_dihedral_angle_d 13.257
    f_angle_d 0.614
    f_bond_d 0.002
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 27532
    Nucleic Acid Atoms 724
    Heterogen Atoms 34
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CBASS
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.9_1692)
     
    Software
    refinement PHENIX version: (phenix.refine: dev_1563)
    model building PHENIX
    data collection CBASS