POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4OLA
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 9
    Temperature 293.0
    Details 16% PEG3350, 12% isopropanol, 0.1 M phenol, 0.1 M Tris, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 63.16 α = 90
    b = 107.67 β = 107.1
    c = 68.52 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
    Diffrn ID 2
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2011-11-19
    Detector PIXEL
    Type DECTRIS PILATUS 6M
    Collection Date 2011-12-09
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
    Monochromator Si(111)
    Diffraction Protocol MAD
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-E
    Wavelength List 0.97920
    Site APS
    Beamline 24-ID-E
    Source SYNCHROTRON
    Type SSRL BEAMLINE BL11-1
    Wavelength List 0.97926, 0.91837
    Site SSRL
    Beamline BL11-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.2
    Resolution(Low) 65.49
    Number Reflections(Observed) 44375
    Percent Possible(Observed) 99.4
    R Merge I(Observed) 0.057
    Redundancy 3.8
     
    High Resolution Shell Details
    Resolution(High) 2.2
    Resolution(Low) 2.28
    Percent Possible(All) 98.7
    R Merge I(Observed) 0.741
    Redundancy 3.7
    Number Unique Reflections(All) 4372
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 2.3
    Resolution(Low) 41.588
    Cut-off Sigma(F) 1.36
    Number of Reflections(Observed) 38697
    Number of Reflections(R-Free) 1960
    Percent Reflections(Observed) 99.36
    R-Factor(Observed) 0.2141
    R-Work 0.212
    R-Free 0.2529
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.3575
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2615
    R-Factor(R-Work) 0.2584
    R-Factor(R-Free) 0.3449
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3575
    Shell Resolution(Low) 2.4213
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2597
    R-Factor(R-Work) 0.2566
    R-Factor(R-Free) 0.3597
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4213
    Shell Resolution(Low) 2.4925
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2598
    R-Factor(R-Work) 0.2429
    R-Factor(R-Free) 0.3125
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4925
    Shell Resolution(Low) 2.5729
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2592
    R-Factor(R-Work) 0.2351
    R-Factor(R-Free) 0.3424
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5729
    Shell Resolution(Low) 2.6649
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2624
    R-Factor(R-Work) 0.238
    R-Factor(R-Free) 0.2819
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6649
    Shell Resolution(Low) 2.7716
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2621
    R-Factor(R-Work) 0.2349
    R-Factor(R-Free) 0.2976
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7716
    Shell Resolution(Low) 2.8977
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2633
    R-Factor(R-Work) 0.2332
    R-Factor(R-Free) 0.268
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8977
    Shell Resolution(Low) 3.0504
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2612
    R-Factor(R-Work) 0.2401
    R-Factor(R-Free) 0.3112
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0504
    Shell Resolution(Low) 3.2415
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2611
    R-Factor(R-Work) 0.2324
    R-Factor(R-Free) 0.2991
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2415
    Shell Resolution(Low) 3.4916
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2658
    R-Factor(R-Work) 0.2295
    R-Factor(R-Free) 0.2868
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4916
    Shell Resolution(Low) 3.8428
    Number of Reflections(R-Free) 120
    Number of Reflections(R-Work) 2633
    R-Factor(R-Work) 0.2049
    R-Factor(R-Free) 0.2276
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8428
    Shell Resolution(Low) 4.3983
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2648
    R-Factor(R-Work) 0.1907
    R-Factor(R-Free) 0.2301
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3983
    Shell Resolution(Low) 5.5393
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2648
    R-Factor(R-Work) 0.1813
    R-Factor(R-Free) 0.2032
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.5393
    Shell Resolution(Low) 41.5946
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2647
    R-Factor(R-Work) 0.1987
    R-Factor(R-Free) 0.2086
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.053
    f_dihedral_angle_d 14.352
    f_angle_d 0.776
    f_bond_d 0.003
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6343
    Nucleic Acid Atoms 191
    Heterogen Atoms 11
    Solvent Atoms 177
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.8.2_1309)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8.2_1309)
    model building PHENIX
    data collection ADSC version: Quantum