X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 291.0
Details 0.1 M Tris, 0.2 M ammonium sulfate, 17% PEG3350, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 320.7 α = 90
b = 75.06 β = 90
c = 108.35 γ = 90
Symmetry
Space Group P 21 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2013-12-04
Diffraction Radiation
Monochromator Protocol
double crystal Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON BESSY BEAMLINE 14.1 0.979 BESSY 14.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3 48.9 99.6 0.102 -- -- 5.1 53285 53285 2.0 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.999 3.29 98.4 0.847 -- 2.1 5.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 3.1 48.898 -- 1.3 -- 48418 2425 99.08 -- 0.2305 0.227 0.2956 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.1 3.1352 -- 158 2914 0.3482 0.3919 -- 100.0
X Ray Diffraction 3.1352 3.1721 -- 149 2820 0.3305 0.3705 -- 99.0
X Ray Diffraction 3.1721 3.2108 -- 156 2929 0.3232 0.3694 -- 100.0
X Ray Diffraction 3.2108 3.2514 -- 151 2900 0.3007 0.3768 -- 100.0
X Ray Diffraction 3.2514 3.2942 -- 155 2901 0.2928 0.3589 -- 100.0
X Ray Diffraction 3.2942 3.3393 -- 152 2826 0.2858 0.3646 -- 100.0
X Ray Diffraction 3.3393 3.387 -- 158 2948 0.2815 0.3444 -- 99.0
X Ray Diffraction 3.387 3.4375 -- 152 2855 0.2838 0.3283 -- 99.0
X Ray Diffraction 3.4375 3.4912 -- 149 2872 0.2636 0.35 -- 99.0
X Ray Diffraction 3.4912 3.5485 -- 156 2895 0.2549 0.3378 -- 99.0
X Ray Diffraction 3.5485 3.6096 -- 149 2874 0.2528 0.3413 -- 99.0
X Ray Diffraction 3.6096 3.6753 -- 148 2852 0.2333 0.2965 -- 99.0
X Ray Diffraction 3.6753 3.7459 -- 155 2909 0.2292 0.2979 -- 99.0
X Ray Diffraction 3.7459 3.8224 -- 151 2834 0.22 0.3069 -- 99.0
X Ray Diffraction 3.8224 3.9054 -- 151 2892 0.2172 0.2699 -- 98.0
X Ray Diffraction 3.9054 3.9962 -- 153 2881 0.225 0.3248 -- 99.0
X Ray Diffraction 3.9962 4.0961 -- 147 2853 0.2198 0.2923 -- 99.0
X Ray Diffraction 4.0961 4.2068 -- 152 2914 0.2111 0.2793 -- 99.0
X Ray Diffraction 4.2068 4.3305 -- 150 2873 0.2069 0.2998 -- 99.0
X Ray Diffraction 4.3305 4.4702 -- 143 2860 0.2036 0.2932 -- 99.0
X Ray Diffraction 4.4702 4.6299 -- 151 2886 0.1943 0.2528 -- 99.0
X Ray Diffraction 4.6299 4.8151 -- 153 2854 0.1903 0.3053 -- 99.0
X Ray Diffraction 4.8151 5.034 -- 150 2904 0.1799 0.2149 -- 99.0
X Ray Diffraction 5.034 5.2991 -- 150 2888 0.2022 0.2871 -- 99.0
X Ray Diffraction 5.2991 5.6307 -- 146 2850 0.201 0.2957 -- 99.0
X Ray Diffraction 5.6307 6.0647 -- 149 2879 0.2129 0.3033 -- 99.0
X Ray Diffraction 6.0647 6.6737 -- 145 2874 0.2067 0.2911 -- 98.0
X Ray Diffraction 6.6737 7.6362 -- 151 2860 0.2063 0.2543 -- 99.0
X Ray Diffraction 7.6362 9.6088 -- 159 2867 0.209 0.2395 -- 99.0
X Ray Diffraction 9.6088 48.904 -- 151 2828 0.249 0.3045 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.066
f_dihedral_angle_d 15.782
f_angle_d 1.069
f_bond_d 0.016
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 12734
Nucleic Acid Atoms 1360
Heterogen Atoms 10
Solvent Atoms 1

Software

Computing
Computing Package Purpose
XDS Data Collection
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
AutoSol Structure Solution
PHENIX (phenix.refine: 1.8.2_1309) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.2_1309) refinement
AutoSol model building
XDS data collection