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X-RAY DIFFRACTION
Materials and Methods page
4O3M
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 6
    Temperature 293.0
    Details 6-10% Isopropanol, 50mM MES, 10mM magnesium chloride., pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 100.93 α = 90
    b = 164.68 β = 90.14
    c = 50.98 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 6M
    Details slits
    Collection Date 2013-12-05
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I04
    Wavelength List 0.9795
    Site DIAMOND
    Beamline I04
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 2.3
    Resolution(Low) 35.91
    Number Reflections(All) 36392
    Number Reflections(Observed) 36392
    Percent Possible(Observed) 98.8
    R Merge I(Observed) 0.03
    B(Isotropic) From Wilson Plot 59.56
    Redundancy 3.4
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Resolution(Low) 2.36
    Percent Possible(All) 99.0
    R Merge I(Observed) 0.695
    Mean I Over Sigma(Observed) 2.1
    R-Sym I(Observed) 0.498
    Redundancy 3.4
    Number Unique Reflections(All) 2666
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 2.3
    Resolution(Low) 35.91
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 34639
    Number of Reflections(Observed) 34639
    Number of Reflections(R-Free) 1735
    Percent Reflections(Observed) 94.05
    R-Factor(All) 0.1829
    R-Factor(Observed) 0.1829
    R-Work 0.1811
    R-Free 0.2153
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 85.6
    Anisotropic B[1][1] -33.2893
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 1.9695
    Anisotropic B[2][2] 18.9673
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 14.322
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.37
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2359
    R-Factor(R-Work) 0.2141
    R-Factor(R-Free) 0.2336
    Percent Reflections(Observed) 94.05
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_other_torsion 20.71
    t_omega_torsion 2.99
    t_angle_deg 1.07
    t_bond_d 0.01
     
    Coordinate Error
    Luzzati ESD(Observed) 0.355
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4721
    Nucleic Acid Atoms 570
    Heterogen Atoms 61
    Solvent Atoms 60
     
     
  •   Software and Computing Hide
    Computing
    Data Collection Diamond GDA
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution SHARP
    Structure Refinement BUSTER 2.11.5
     
    Software
    refinement BUSTER version: 2.11.5
    model building SHARP
    data collection Diamond version: GDA