X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Evaporation
pH 7
Temperature 290.0
Details hanging drop, pH 7, EVAPORATION, temperature 290K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 25.38 α = 90
b = 40.27 β = 90
c = 65.4 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID -- APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.22 10 99.0 -- -- -- -- 17417 17380 2.0 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.219 9.586 -- 1.36 17417 17380 1736 84.24 -- 0.2132 0.2101 0.24 10% random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.2191 1.2549 -- 63 571 0.3406 0.3594 -- 38.0
X Ray Diffraction 1.2549 1.2953 -- 95 844 0.3223 0.3261 -- 56.0
X Ray Diffraction 1.2953 1.3415 -- 129 1173 0.3065 0.3112 -- 76.0
X Ray Diffraction 1.3415 1.3951 -- 162 1451 0.2756 0.2724 -- 95.0
X Ray Diffraction 1.3951 1.4584 -- 166 1499 0.248 0.2715 -- 99.0
X Ray Diffraction 1.4584 1.535 -- 171 1530 0.2373 0.2512 -- 99.0
X Ray Diffraction 1.535 1.6307 -- 165 1513 0.2141 0.2272 -- 99.0
X Ray Diffraction 1.6307 1.7559 -- 169 1523 0.1864 0.197 -- 99.0
X Ray Diffraction 1.7559 1.9313 -- 173 1557 0.19 0.2193 -- 100.0
X Ray Diffraction 1.9313 2.2078 -- 171 1546 0.1836 0.2021 -- 100.0
X Ray Diffraction 2.2078 2.7704 -- 174 1555 0.1969 0.2394 -- 98.0
X Ray Diffraction 2.7704 9.5866 -- 98 882 0.2307 0.2859 -- 53.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.022
f_chiral_restr 0.282
f_dihedral_angle_d 31.262
f_angle_d 2.07
f_bond_d 0.009
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 0
Nucleic Acid Atoms 488
Heterogen Atoms 1
Solvent Atoms 193

Software

Computing
Computing Package Purpose
PHENIX (phenix.refine: 1.8.2_1309) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.2_1309) refinement