POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4MGM
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 6
    Temperature 291.0
    Details 75mM NaCl, 2mM CoCl2, 50mM sodium cacodylate, 0.5mM spermine, 30% w/v 1,6-Hexanediol, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 161.23 α = 90
    b = 28.41 β = 110.69
    c = 132.94 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2012-11-01
     
    Diffraction Radiation
    Monochromator Horizontal focusing 5.05 asymmetric cut Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CHESS BEAMLINE A1
    Wavelength List 0.976
    Site CHESS
    Beamline A1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 3.2
    Resolution(Low) 35
    Number Reflections(Observed) 8419
    Percent Possible(Observed) 82.8
    R Merge I(Observed) 0.158
    B(Isotropic) From Wilson Plot 62.12
    Redundancy 5.6
     
    High Resolution Shell Details
    Resolution(High) 3.2
    Resolution(Low) 3.26
    Percent Possible(All) 46.2
    R Merge I(Observed) 0.324
    Mean I Over Sigma(Observed) 3.14
    Redundancy 4.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.2
    Resolution(Low) 33.169
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 7647
    Number of Reflections(R-Free) 380
    Percent Reflections(Observed) 77.65
    R-Factor(Observed) 0.2485
    R-Work 0.2477
    R-Free 0.2614
     
    Temperature Factor Modeling
    Mean Isotropic B Value 98.3276
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2004
    Shell Resolution(Low) 3.663
    Number of Reflections(R-Free) 75
    Number of Reflections(R-Work) 1372
    R-Factor(R-Work) 0.2215
    R-Factor(R-Free) 0.2513
    Percent Reflections(Observed) 45.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.663
    Shell Resolution(Low) 4.613
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2688
    R-Factor(R-Work) 0.2587
    R-Factor(R-Free) 0.3158
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.613
    Shell Resolution(Low) 33.1708
    Number of Reflections(R-Free) 169
    Number of Reflections(R-Work) 3207
    R-Factor(R-Work) 0.2482
    R-Factor(R-Free) 0.2426
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.002
    f_chiral_restr 0.02
    f_dihedral_angle_d 13.252
    f_angle_d 0.403
    f_bond_d 0.001
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 0
    Nucleic Acid Atoms 2694
    Heterogen Atoms 14
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADX
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8.3_1479)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction SCALEPACK