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X-RAY DIFFRACTION
Materials and Methods page
4LUP
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Temperature 293.0
    Details The complex crystallized spontaneously at a concentration of 0.5 mM in the NMR buffer (10 mM Na-Phosphate buffer pH 6.5, 50 mM NaCl), BATCH, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 39.05 α = 90
    b = 36.48 β = 92.48
    c = 73.37 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type PSI PILATUS 2M-F
    Collection Date 2013-04-30
     
    Diffraction Radiation
    Monochromator FIXED EXIT DOUBLE, CHANNEL DCM MONOCHROMATOR
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06DA
    Wavelength List 0.80000
    Site SLS
    Beamline X06DA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.2
    Resolution(Low) 35.08
    Number Reflections(Observed) 64851
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.043
    B(Isotropic) From Wilson Plot 12.5
    Redundancy 13.3
     
    High Resolution Shell Details
    Resolution(High) 1.2
    Resolution(Low) 1.3
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.657
    Mean I Over Sigma(Observed) 4.38
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.2
    Resolution(Low) 35.075
    Cut-off Sigma(F) 1.36
    Number of Reflections(Observed) 64837
    Number of Reflections(R-Free) 972
    Percent Reflections(Observed) 99.96
    R-Factor(Observed) 0.1474
    R-Work 0.1471
    R-Free 0.1648
     
    Temperature Factor Modeling
    Mean Isotropic B Value 17.3977
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2
    Shell Resolution(Low) 1.2633
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 9087
    R-Factor(R-Work) 0.1539
    R-Factor(R-Free) 0.1913
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2633
    Shell Resolution(Low) 1.3424
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 9044
    R-Factor(R-Work) 0.1306
    R-Factor(R-Free) 0.1742
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3424
    Shell Resolution(Low) 1.4461
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 9082
    R-Factor(R-Work) 0.1196
    R-Factor(R-Free) 0.1736
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4461
    Shell Resolution(Low) 1.5916
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 9082
    R-Factor(R-Work) 0.1044
    R-Factor(R-Free) 0.1288
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5916
    Shell Resolution(Low) 1.8219
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 9113
    R-Factor(R-Work) 0.1151
    R-Factor(R-Free) 0.1404
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8219
    Shell Resolution(Low) 2.2954
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 9153
    R-Factor(R-Work) 0.1459
    R-Factor(R-Free) 0.1402
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2954
    Shell Resolution(Low) 35.0905
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 9304
    R-Factor(R-Work) 0.1682
    R-Factor(R-Free) 0.1843
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.066
    f_dihedral_angle_d 16.387
    f_angle_d 0.994
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1503
    Nucleic Acid Atoms 268
    Heterogen Atoms 4
    Solvent Atoms 207
     
     
  •   Software and Computing Hide
    Computing
    Data Collection DA+
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8.4_1496)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction Xscale