POP-OUT | CLOSE

An Information Portal to 108957 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4LJ0
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.5
    Temperature 291.0
    Details see manuscript, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 90.93 α = 90
    b = 90.93 β = 90
    c = 54.08 γ = 120
     
    Space Group
    Space Group Name:    P 31 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector STORAGE PHOSPHORS
    Type PSI PILATUS 6M
    Details mirrors
    Collection Date 2012-09-17
     
    Diffraction Radiation
    Monochromator Si 111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I02
    Wavelength List 0.9795
    Site DIAMOND
    Beamline I02
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.15
    Resolution(Low) 44.58
    Number Reflections(All) 14357
    Number Reflections(Observed) 14357
    Percent Possible(Observed) 100.0
     
    High Resolution Shell Details
    Resolution(High) 2.15
    Resolution(Low) 2.27
    Percent Possible(All) 100.0
    Mean I Over Sigma(Observed) 2.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 2.15
    Resolution(Low) 44.58
    Cut-off Sigma(F) 1.34
    Number of Reflections(all) 14328
    Number of Reflections(Observed) 14328
    Number of Reflections(R-Free) 701
    Percent Reflections(Observed) 99.93
    R-Factor(Observed) 0.1952
    R-Work 0.1946
    R-Free 0.2066
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.15
    Shell Resolution(Low) 2.316
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2679
    R-Factor(R-Work) 0.266
    R-Factor(R-Free) 0.2902
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.316
    Shell Resolution(Low) 2.5491
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2683
    R-Factor(R-Work) 0.2168
    R-Factor(R-Free) 0.2416
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5491
    Shell Resolution(Low) 2.9178
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2711
    R-Factor(R-Work) 0.2145
    R-Factor(R-Free) 0.2305
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9178
    Shell Resolution(Low) 3.6759
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2724
    R-Factor(R-Work) 0.2019
    R-Factor(R-Free) 0.2261
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6759
    Shell Resolution(Low) 44.5899
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2830
    R-Factor(R-Work) 0.1748
    R-Factor(R-Free) 0.1722
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.043
    f_dihedral_angle_d 14.125
    f_angle_d 0.866
    f_bond_d 0.003
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1024
    Nucleic Acid Atoms 217
    Heterogen Atoms 18
    Solvent Atoms 25
     
     
  •   Software and Computing Hide
    Computing
    Data Collection EDNA
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) AIMLESS
    Structure Solution Phenix
    Structure Refinement PHENIX (phenix.refine: 1.8.2_1309)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8.2_1309)
    model building Phenix
    data collection EDNA