X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.3
Details 16% (v/v) polypropylene glycol 400, 12% (v/v) 1-propanol, VAPOR DIFFUSION, HANGING DROP, temperature 293.3K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 80.94 α = 90
b = 42.2 β = 102.61
c = 169.43 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r monochromator 2011-11-09
Diffraction Radiation
Monochromator Protocol
Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.3.1 1.115869 ALS 8.3.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.3 50 92.0 0.044 -- -- 2.4 -- 126732 -- -3.0 10.2
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.3 1.35 85.1 0.854 -- 1.14 2.1 12452

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.3 40.461 -- 1.99 -- 126729 1991 92.01 -- 0.1735 0.1731 0.2034 random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.3 1.3325 -- 125 8133 0.3031 0.3222 -- 85.0
X Ray Diffraction 1.3325 1.3685 -- 132 8250 0.2801 0.3018 -- 86.0
X Ray Diffraction 1.3685 1.4088 -- 134 8361 0.2578 0.2769 -- 87.0
X Ray Diffraction 1.4088 1.4543 -- 134 8513 0.2331 0.2871 -- 89.0
X Ray Diffraction 1.4543 1.5062 -- 139 8724 0.2092 0.258 -- 90.0
X Ray Diffraction 1.5062 1.5666 -- 141 8811 0.1871 0.2352 -- 91.0
X Ray Diffraction 1.5666 1.6379 -- 143 8953 0.1658 0.1906 -- 93.0
X Ray Diffraction 1.6379 1.7242 -- 145 9027 0.1502 0.2008 -- 94.0
X Ray Diffraction 1.7242 1.8322 -- 146 9211 0.1443 0.181 -- 94.0
X Ray Diffraction 1.8322 1.9737 -- 149 9238 0.1439 0.1697 -- 96.0
X Ray Diffraction 1.9737 2.1723 -- 143 9320 0.1433 0.1876 -- 96.0
X Ray Diffraction 2.1723 2.4866 -- 149 9351 0.1514 0.1809 -- 96.0
X Ray Diffraction 2.4866 3.1327 -- 157 9427 0.1649 0.1806 -- 97.0
X Ray Diffraction 3.1327 40.4806 -- 154 9419 0.1703 0.1967 -- 94.0
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model anisotropic
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.008
f_chiral_restr 0.069
f_dihedral_angle_d 13.488
f_angle_d 1.309
f_bond_d 0.009
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3904
Nucleic Acid Atoms 887
Heterogen Atoms 0
Solvent Atoms 630

Software

Computing
Computing Package Purpose
ELVES Data Collection
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
PHENIX Structure Solution
PHENIX (phenix.refine: 1.8_1069) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8_1069) refinement
PHENIX model building
ELVES data collection