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X-RAY DIFFRACTION
Materials and Methods page
4LGT
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    Temperature 293.3
    Details 16% (v/v) polypropylene glycol 400, 12% (v/v) 1-propanol, VAPOR DIFFUSION, HANGING DROP, temperature 293.3K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 80.94 α = 90
    b = 42.2 β = 102.61
    c = 169.43 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Details monochromator
    Collection Date 2011-11-09
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 8.3.1
    Wavelength List 1.115869
    Site ALS
    Beamline 8.3.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.3
    Resolution(Low) 50
    Number Reflections(Observed) 126732
    Percent Possible(Observed) 92.0
    R Merge I(Observed) 0.044
    B(Isotropic) From Wilson Plot 10.2
    Redundancy 2.4
     
    High Resolution Shell Details
    Resolution(High) 1.3
    Resolution(Low) 1.35
    Percent Possible(All) 85.1
    R Merge I(Observed) 0.854
    Mean I Over Sigma(Observed) 1.14
    Redundancy 2.1
    Number Unique Reflections(All) 12452
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.3
    Resolution(Low) 40.461
    Cut-off Sigma(F) 1.99
    Number of Reflections(Observed) 126729
    Number of Reflections(R-Free) 1991
    Percent Reflections(Observed) 92.01
    R-Factor(Observed) 0.1735
    R-Work 0.1731
    R-Free 0.2034
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Isotropic Thermal Model anisotropic
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3
    Shell Resolution(Low) 1.3325
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 8133
    R-Factor(R-Work) 0.3031
    R-Factor(R-Free) 0.3222
    Percent Reflections(Observed) 85.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3325
    Shell Resolution(Low) 1.3685
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 8250
    R-Factor(R-Work) 0.2801
    R-Factor(R-Free) 0.3018
    Percent Reflections(Observed) 86.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3685
    Shell Resolution(Low) 1.4088
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 8361
    R-Factor(R-Work) 0.2578
    R-Factor(R-Free) 0.2769
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4088
    Shell Resolution(Low) 1.4543
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 8513
    R-Factor(R-Work) 0.2331
    R-Factor(R-Free) 0.2871
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4543
    Shell Resolution(Low) 1.5062
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 8724
    R-Factor(R-Work) 0.2092
    R-Factor(R-Free) 0.258
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5062
    Shell Resolution(Low) 1.5666
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 8811
    R-Factor(R-Work) 0.1871
    R-Factor(R-Free) 0.2352
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5666
    Shell Resolution(Low) 1.6379
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 8953
    R-Factor(R-Work) 0.1658
    R-Factor(R-Free) 0.1906
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6379
    Shell Resolution(Low) 1.7242
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 9027
    R-Factor(R-Work) 0.1502
    R-Factor(R-Free) 0.2008
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7242
    Shell Resolution(Low) 1.8322
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 9211
    R-Factor(R-Work) 0.1443
    R-Factor(R-Free) 0.181
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8322
    Shell Resolution(Low) 1.9737
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 9238
    R-Factor(R-Work) 0.1439
    R-Factor(R-Free) 0.1697
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9737
    Shell Resolution(Low) 2.1723
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 9320
    R-Factor(R-Work) 0.1433
    R-Factor(R-Free) 0.1876
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1723
    Shell Resolution(Low) 2.4866
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 9351
    R-Factor(R-Work) 0.1514
    R-Factor(R-Free) 0.1809
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4866
    Shell Resolution(Low) 3.1327
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 9427
    R-Factor(R-Work) 0.1649
    R-Factor(R-Free) 0.1806
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1327
    Shell Resolution(Low) 40.4806
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 9419
    R-Factor(R-Work) 0.1703
    R-Factor(R-Free) 0.1967
    Percent Reflections(Observed) 94.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.008
    f_chiral_restr 0.069
    f_dihedral_angle_d 13.488
    f_angle_d 1.309
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3904
    Nucleic Acid Atoms 887
    Heterogen Atoms 0
    Solvent Atoms 630
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ELVES
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.8_1069)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8_1069)
    model building PHENIX
    data collection ELVES