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X-RAY DIFFRACTION
Materials and Methods page
4L5S
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.3
    Temperature 293.0
    Details 2.2 M ammonium sulfate, 0.1 M sodium cacodylate pH 5.2-5.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 111.31 α = 90
    b = 156.12 β = 90
    c = 117.61 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 4
    Collection Date 2011-07-31
     
    Diffraction Radiation
    Monochromator Rosenbaum-Rock double crystal sagittal focusing monochrometer and vertical focusing mirror
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X29A
    Wavelength List 1.075
    Site NSLS
    Beamline X29A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 3.0
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 2.94
    Resolution(Low) 46.97
    Number Reflections(All) 307230
    Percent Possible(Observed) 100.0
     
     
  •   Refinement Hide
    Refinement Statistics
    reflnsShellList 2.94
    Resolution(Low) 46.97
    Cut-off Sigma(F) 1.89
    Number of Reflections(Observed) 22039
    Number of Reflections(R-Free) 1129
    Percent Reflections(Observed) 99.7
    R-Factor(Observed) 0.207
    R-Work 0.204
    R-Free 0.255
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -6.605
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 4.6177
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.9873
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9426
    Shell Resolution(Low) 3.0765
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2523
    R-Factor(R-Work) 0.3368
    R-Factor(R-Free) 0.3934
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0765
    Shell Resolution(Low) 3.2387
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2569
    R-Factor(R-Work) 0.2402
    R-Factor(R-Free) 0.2983
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2387
    Shell Resolution(Low) 3.4416
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2597
    R-Factor(R-Work) 0.2019
    R-Factor(R-Free) 0.2859
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4416
    Shell Resolution(Low) 3.7072
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2610
    R-Factor(R-Work) 0.2062
    R-Factor(R-Free) 0.2797
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7072
    Shell Resolution(Low) 4.0801
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2594
    R-Factor(R-Work) 0.2062
    R-Factor(R-Free) 0.2646
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0801
    Shell Resolution(Low) 4.67
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2624
    R-Factor(R-Work) 0.1585
    R-Factor(R-Free) 0.2225
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.67
    Shell Resolution(Low) 5.8819
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2654
    R-Factor(R-Work) 0.1879
    R-Factor(R-Free) 0.2375
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.8819
    Shell Resolution(Low) 46.9756
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2739
    R-Factor(R-Work) 0.2098
    R-Factor(R-Free) 0.2175
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.007
    f_chiral_restr 0.092
    f_dihedral_angle_d 26.68
    f_angle_d 1.491
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3186
    Nucleic Acid Atoms 1487
    Heterogen Atoms 25
    Solvent Atoms 7
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CBASS
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASES
    Structure Refinement PHENIX (PHENIX.REFINE: 1.7.1_743)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.1_743)
    model building PHASES
    data collection CBASS