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X-RAY DIFFRACTION
Materials and Methods page
4L26
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 277.0
    Details Sodium Cacodylate, Spermine tetrahydrochloride, 2-methyl-2,4-pentanediol, ammonium chloride , pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 27.36 α = 90
    b = 39.31 β = 99.41
    c = 30.46 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 277
     
    Diffraction Detector
    Collection Date 2012-10-22
     
    Diffraction Radiation
    Diffraction Protocol MAD
     
    Diffraction Source
    Source SYNCHROTRON
    Type PHOTON FACTORY BEAMLINE AR-NW12A
    Wavelength List 1.0, 0.91942, 0.92006
    Site PHOTON FACTORY
    Beamline AR-NW12A
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.4
    Resolution(Low) 21.94
    Number Reflections(Observed) 12212
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 1.4
    Resolution(Low) 21.94
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 12212
    Number of Reflections(R-Free) 1260
    Percent Reflections(Observed) 96.4
    R-Work 0.2323
    R-Free 0.2662
     
    Temperature Factor Modeling
    Mean Isotropic B Value 19.0444
    Anisotropic B[1][1] -1.441
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 9.21
    Anisotropic B[2][2] -3.437
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 4.878
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4
    Shell Resolution(Low) 1.45
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 1132
    R-Factor(R-Work) 0.4596
    R-Factor(R-Free) 0.4495
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.45
    Shell Resolution(Low) 1.51
    Number of Reflections(R-Free) 109
    Number of Reflections(R-Work) 1110
    R-Factor(R-Work) 0.4439
    R-Factor(R-Free) 0.4432
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.51
    Shell Resolution(Low) 1.58
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1071
    R-Factor(R-Work) 0.3337
    R-Factor(R-Free) 0.3553
    Percent Reflections(Observed) 97.9
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.58
    Shell Resolution(Low) 1.66
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 1120
    R-Factor(R-Work) 0.2934
    R-Factor(R-Free) 0.4039
    Percent Reflections(Observed) 98.7
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.66
    Shell Resolution(Low) 1.76
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 1111
    R-Factor(R-Work) 0.2234
    R-Factor(R-Free) 0.2983
    Percent Reflections(Observed) 98.8
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.76
    Shell Resolution(Low) 1.9
    Number of Reflections(R-Free) 112
    Number of Reflections(R-Work) 1135
    R-Factor(R-Work) 0.2309
    R-Factor(R-Free) 0.2625
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9
    Shell Resolution(Low) 2.09
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1051
    R-Factor(R-Work) 0.2693
    R-Factor(R-Free) 0.2955
    Percent Reflections(Observed) 93.9
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.09
    Shell Resolution(Low) 2.39
    Number of Reflections(R-Free) 107
    Number of Reflections(R-Work) 999
    R-Factor(R-Work) 0.2241
    R-Factor(R-Free) 0.2965
    Percent Reflections(Observed) 87.7
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.39
    Shell Resolution(Low) 3.02
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1140
    R-Factor(R-Work) 0.1991
    R-Factor(R-Free) 0.2379
    Percent Reflections(Observed) 99.3
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.02
    Shell Resolution(Low) 100.0
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 1083
    R-Factor(R-Work) 0.1722
    R-Factor(R-Free) 0.1865
    Percent Reflections(Observed) 92.5
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_mcangle_it 1.986
    c_mcbond_it 1.494
    c_angle_deg 0.964
    c_bond_d 0.003
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 0
    Nucleic Acid Atoms 486
    Heterogen Atoms 0
    Solvent Atoms 135
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) CrystalClear
    Data Reduction (data scaling) CrystalClear
    Structure Solution Phenix
    Structure Refinement CNS
     
    Software
    data extraction pdb_extract version: 3.11
    refinement CNS