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X-RAY DIFFRACTION
Materials and Methods page
4L24
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 277.0
    Details Sodium Cacodylate, Spermine tetrahydrochloride, 2-methyl-2,4-pentanediol, ammonium chloride, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 25.5 α = 90
    b = 41.27 β = 90
    c = 64.56 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Collection Date 2011-10-16
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PHOTON FACTORY BEAMLINE BL-1A
    Wavelength List 1.0
    Site PHOTON FACTORY
    Beamline BL-1A
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.7
    Resolution(Low) 34.8
    Number Reflections(Observed) 2064
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.7
    Resolution(Low) 34.77
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 2064
    Number of Reflections(R-Free) 187
    Percent Reflections(Observed) 99.2
    R-Work 0.258
    R-Free 0.267
     
    Temperature Factor Modeling
    Mean Isotropic B Value 62.5829
    Anisotropic B[1][1] -1.457
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 37.106
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -35.65
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7
    Shell Resolution(Low) 2.8
    Number of Reflections(R-Free) 17
    Number of Reflections(R-Work) 180
    R-Factor(R-Work) 0.8166
    R-Factor(R-Free) 0.8869
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8
    Shell Resolution(Low) 2.91
    Number of Reflections(R-Free) 13
    Number of Reflections(R-Work) 187
    R-Factor(R-Work) 0.8338
    R-Factor(R-Free) 0.011
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.91
    Shell Resolution(Low) 3.04
    Number of Reflections(R-Free) 16
    Number of Reflections(R-Work) 180
    R-Factor(R-Work) 0.5406
    R-Factor(R-Free) 0.011
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.04
    Shell Resolution(Low) 3.2
    Number of Reflections(R-Free) 16
    Number of Reflections(R-Work) 198
    R-Factor(R-Work) 0.3212
    R-Factor(R-Free) 0.011
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2
    Shell Resolution(Low) 3.4
    Number of Reflections(R-Free) 12
    Number of Reflections(R-Work) 178
    R-Factor(R-Work) 0.2879
    R-Factor(R-Free) 0.011
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4
    Shell Resolution(Low) 3.66
    Number of Reflections(R-Free) 24
    Number of Reflections(R-Work) 195
    R-Factor(R-Work) 0.1891
    R-Factor(R-Free) 0.011
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.66
    Shell Resolution(Low) 4.03
    Number of Reflections(R-Free) 14
    Number of Reflections(R-Work) 189
    R-Factor(R-Work) 0.2313
    R-Factor(R-Free) 0.011
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.03
    Shell Resolution(Low) 4.62
    Number of Reflections(R-Free) 23
    Number of Reflections(R-Work) 184
    R-Factor(R-Work) 0.2189
    R-Factor(R-Free) 0.011
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.62
    Shell Resolution(Low) 5.82
    Number of Reflections(R-Free) 25
    Number of Reflections(R-Work) 192
    R-Factor(R-Work) 0.2334
    R-Factor(R-Free) 0.011
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.82
    Shell Resolution(Low) 100.0
    Number of Reflections(R-Free) 27
    Number of Reflections(R-Work) 194
    R-Factor(R-Work) 0.2602
    R-Factor(R-Free) 0.011
    Percent Reflections(Observed) 93.2
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_scangle_it 20.381
    c_mcangle_it 20.215
    c_scbond_it 21.154
    c_mcbond_it 0.0
    c_angle_deg 1.16
    c_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 0
    Nucleic Acid Atoms 484
    Heterogen Atoms 2
    Solvent Atoms 14
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) CrystalClear
    Data Reduction (data scaling) CrystalClear
    Structure Solution Phenix
    Structure Refinement CNS
     
    Software
    data extraction pdb_extract version: 3.11
    refinement CNS