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X-RAY DIFFRACTION
Materials and Methods page
4KB6
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 293.0
    Details 0.05 M Na-cacodylate, 2.5 mM spermine, 60 mM magnesium chloride, 3 % PEG 400, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 86.28 α = 90
    b = 111.89 β = 90
    c = 117.78 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 77
     
    Diffraction Detector
    Detector PIXEL
    Type PSI PILATUS 6M
    Collection Date 2013-03-14
     
    Diffraction Radiation
    Monochromator crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
    Wavelength List 0.97626
    Site PETRA III, EMBL C/O DESY
    Beamline P14 (MX2)
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 3.07
    Resolution(Low) 999
    Number Reflections(All) 10913
    Number Reflections(Observed) 10762
    Percent Possible(Observed) 98.6
     
    High Resolution Shell Details
    Resolution(High) 3.07
    Resolution(Low) 3.25
    Percent Possible(All) 91.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.0754
    Resolution(Low) 68.325
    Cut-off Sigma(F) 2.03
    Number of Reflections(Observed) 10739
    Number of Reflections(R-Free) 538
    Percent Reflections(Observed) 98.53
    R-Factor(Observed) 0.2547
    R-Work 0.2545
    R-Free 0.258
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0754
    Shell Resolution(Low) 3.3849
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2396
    R-Factor(R-Work) 0.3143
    R-Factor(R-Free) 0.3338
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3849
    Shell Resolution(Low) 3.8747
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2544
    R-Factor(R-Work) 0.2853
    R-Factor(R-Free) 0.3046
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8747
    Shell Resolution(Low) 4.8815
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2578
    R-Factor(R-Work) 0.2528
    R-Factor(R-Free) 0.2502
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8815
    Shell Resolution(Low) 68.3422
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2683
    R-Factor(R-Work) 0.2345
    R-Factor(R-Free) 0.2327
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.058
    f_dihedral_angle_d 24.454
    f_angle_d 0.888
    f_bond_d 0.004
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2899
    Nucleic Acid Atoms 555
    Heterogen Atoms 65
    Solvent Atoms 2
     
     
  •   Software and Computing Hide
    Computing
    Data Collection mxCuBE Hamburg
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8.2_1309)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8.2_1309)
    model building PHASER
    data collection mxCuBE version: Hamburg