X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.6
Temperature 293.0
Details 0.1 M MES, 8% MPD, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 181.91 α = 90
b = 93.8 β = 97.72
c = 75.51 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 200
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2013-01-23
Diffraction Radiation
Monochromator Protocol
Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X29A 0.9790 NSLS X29A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.08 50 99.8 -- -- -- -- 74501 74352 2.0 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.084 2.18 100.0 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 2.084 45.066 -- 1.35 74501 74352 2000 98.96 -- 0.2023 0.2016 0.2263 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0838 2.1359 -- 126 4559 0.2516 0.2785 -- 88.0
X Ray Diffraction 2.1359 2.1937 -- 143 5187 0.2405 0.2956 -- 100.0
X Ray Diffraction 2.1937 2.2582 -- 145 5206 0.2282 0.2787 -- 100.0
X Ray Diffraction 2.2582 2.3311 -- 142 5192 0.222 0.2418 -- 100.0
X Ray Diffraction 2.3311 2.4144 -- 144 5187 0.2196 0.2732 -- 100.0
X Ray Diffraction 2.4144 2.5111 -- 145 5219 0.2144 0.2714 -- 100.0
X Ray Diffraction 2.5111 2.6253 -- 144 5225 0.2123 0.2624 -- 100.0
X Ray Diffraction 2.6253 2.7637 -- 143 5182 0.2279 0.2568 -- 100.0
X Ray Diffraction 2.7637 2.9369 -- 145 5244 0.2166 0.2899 -- 100.0
X Ray Diffraction 2.9369 3.1636 -- 144 5199 0.2152 0.1967 -- 100.0
X Ray Diffraction 3.1636 3.4818 -- 144 5204 0.1984 0.2105 -- 100.0
X Ray Diffraction 3.4818 3.9854 -- 145 5255 0.1821 0.2154 -- 100.0
X Ray Diffraction 3.9854 5.0201 -- 145 5245 0.1676 0.1896 -- 100.0
X Ray Diffraction 5.0201 45.0764 -- 145 5248 0.206 0.2114 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.003
f_chiral_restr 0.077
f_dihedral_angle_d 19.981
f_angle_d 0.947
f_bond_d 0.003
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5875
Nucleic Acid Atoms 1382
Heterogen Atoms 2
Solvent Atoms 722

Software

Computing
Computing Package Purpose
CBASS Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
SOLVE Structure Solution
PHENIX (phenix.refine: 1.8.1_1168) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.1_1168) refinement
SOLVE model building
CBASS data collection