X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 291.0
Details 0.2M Lithium chloride, 2.2M Ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 291K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 112.21 α = 90
b = 142.62 β = 90
c = 66.7 γ = 90
Symmetry
Space Group P 21 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL PSI PILATUS 6M -- 2012-07-05
Diffraction Radiation
Monochromator Protocol
LN2 cooled fixed-exit Si(111) monochromator SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA 0.97793 SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.28 48.71 99.9 -- -- -- 6.7 49646 49600 0.0 -3.0 43.96
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.28 2.42 99.9 -- -- 0.82 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.28 48.712 -- 1.99 49586 49542 2524 99.81 -- 0.1976 0.1953 0.2383 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.28 2.3239 -- 126 2603 0.366 0.4217 -- 100.0
X Ray Diffraction 2.3239 2.3713 -- 133 2563 0.3483 0.3854 -- 100.0
X Ray Diffraction 2.3713 2.4228 -- 143 2584 0.3288 0.3983 -- 100.0
X Ray Diffraction 2.4228 2.4792 -- 136 2584 0.3042 0.3581 -- 100.0
X Ray Diffraction 2.4792 2.5412 -- 143 2565 0.2867 0.3761 -- 100.0
X Ray Diffraction 2.5412 2.6099 -- 133 2582 0.2647 0.2782 -- 100.0
X Ray Diffraction 2.6099 2.6867 -- 161 2559 0.2652 0.2884 -- 100.0
X Ray Diffraction 2.6867 2.7734 -- 135 2581 0.2584 0.3217 -- 100.0
X Ray Diffraction 2.7734 2.8725 -- 117 2600 0.2498 0.334 -- 100.0
X Ray Diffraction 2.8725 2.9875 -- 151 2586 0.2547 0.3251 -- 100.0
X Ray Diffraction 2.9875 3.1235 -- 144 2598 0.2463 0.324 -- 100.0
X Ray Diffraction 3.1235 3.2881 -- 135 2607 0.2139 0.2928 -- 100.0
X Ray Diffraction 3.2881 3.4941 -- 134 2632 0.1861 0.2531 -- 100.0
X Ray Diffraction 3.4941 3.7637 -- 138 2600 0.1785 0.2346 -- 99.0
X Ray Diffraction 3.7637 4.1423 -- 139 2650 0.1468 0.1632 -- 100.0
X Ray Diffraction 4.1423 4.7413 -- 140 2644 0.1224 0.1538 -- 100.0
X Ray Diffraction 4.7413 5.9718 -- 152 2677 0.1463 0.1971 -- 100.0
X Ray Diffraction 5.9718 48.7235 -- 164 2803 0.163 0.1824 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model isotropic and tls
Mean Isotropic B 61.701
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.072
f_dihedral_angle_d 17.718
f_angle_d 1.157
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6217
Nucleic Acid Atoms 573
Heterogen Atoms 95
Solvent Atoms 134

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
Phenix Structure Solution
PHENIX (phenix.refine: dev_1358) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: dev_1345) refinement
Phenix model building