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X-RAY DIFFRACTION
Materials and Methods page
4JV5
  •   Crystallization Hide
    Crystallization Experiments
    Method EVAPORATION
    pH 6.5
    Temperature 277.15
    Details 12%MPD 0.1M MES-KOH pH6.5 50mM KCL 10mM NH4-CL 15mM Mg2CL, EVAPORATION, temperature 277.15K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 401 α = 90
    b = 401 β = 90
    c = 176 γ = 90
     
    Space Group
    Space Group Name:    P 41 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 77
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2012-08-02
     
    Diffraction Radiation
    Monochromator LENSES
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I04
    Wavelength List 1.000
    Site DIAMOND
    Beamline I04
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 3.1
    Resolution(Low) 45.8
    Number Reflections(All) 241499
    Number Reflections(Observed) 241499
    Percent Possible(Observed) 99.2
     
    High Resolution Shell Details
    Resolution(High) 3.1
    Resolution(Low) 3.3
    Percent Possible(All) 98.7
    Mean I Over Sigma(Observed) 1.8
    R-Sym I(Observed) 0.632
    Redundancy 2.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.162
    Resolution(Low) 29.88
    Number of Reflections(all) 241499
    Number of Reflections(Observed) 219586
    Number of Reflections(R-Free) 11558
    Percent Reflections(Observed) 95.44
    R-Factor(Observed) 0.20002
    R-Work 0.19744
    R-Free 0.24905
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 85.521
    Anisotropic B[1][1] 0.01
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.01
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.02
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.162
    Shell Resolution(Low) 3.243
    Number of Reflections(R-Free) 727
    Number of Reflections(R-Work) 13501
    R-Factor(R-Work) 0.313
    R-Factor(R-Free) 0.345
    Percent Reflections(Observed) 81.03
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scbond_it 5.988
    r_mcangle_it 10.453
    r_mcbond_other 6.539
    r_mcbond_it 6.539
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.008
    r_chiral_restr 0.104
    r_dihedral_angle_4_deg 18.259
    r_dihedral_angle_3_deg 23.62
    r_dihedral_angle_2_deg 34.47
    r_dihedral_angle_1_deg 9.011
    r_angle_other_deg 1.276
    r_angle_refined_deg 1.698
    r_bond_other_d 0.002
    r_bond_refined_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 19120
    Nucleic Acid Atoms 32785
    Heterogen Atoms 18
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.8.0016
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5 version: 5.8.0016