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X-RAY DIFFRACTION
Materials and Methods page
4JV3
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 8.5
    Temperature 290.0
    Details MD PACT screen, H2: 20% PEG 3350, 100mM BisTrisPropane pH 8.5, 200mM Na-bromide; tray 233841 f11, BrabA.00113.a at 23 mg/ml, 2.5mM platencin, VAPOR DIFFUSION, SITTING DROP, temperature 290K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 78.16 α = 90
    b = 84.48 β = 120.81
    c = 74.02 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RIGAKU SATURN 944+
    Details Rigaku VariMax
    Collection Date 2013-02-07
     
    Diffraction Radiation
    Monochromator RIGAKU VARIMAX
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.7
    Resolution(Low) 50
    Number Reflections(All) 45545
    Number Reflections(Observed) 44869
    Percent Possible(Observed) 98.5
    R Merge I(Observed) 0.033
    B(Isotropic) From Wilson Plot 20.929
    Redundancy 11.2
     
    High Resolution Shell Details
    Resolution(High) 1.7
    Resolution(Low) 1.74
    Percent Possible(All) 96.8
    R Merge I(Observed) 0.187
    Mean I Over Sigma(Observed) 7.52
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.7
    Resolution(Low) 42.28
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 45545
    Number of Reflections(Observed) 44869
    Number of Reflections(R-Free) 2264
    Percent Reflections(Observed) 98.79
    R-Factor(All) 0.14382
    R-Factor(Observed) 0.1438
    R-Work 0.1425
    R-Free 0.1689
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model isotropic, TLS
    Mean Isotropic B Value 16.929
    Anisotropic B[1][1] -0.06
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.35
    Anisotropic B[2][2] -0.1
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.03
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7
    Shell Resolution(Low) 1.744
    Number of Reflections(Observed) 3077
    Number of Reflections(R-Free) 194
    Number of Reflections(R-Work) 3077
    R-Factor(R-Work) 0.15
    R-Factor(R-Free) 0.199
    Percent Reflections(Observed) 96.98
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_mcangle_it 1.19
    r_mcbond_other 0.734
    r_bond_refined_d 0.013
    r_bond_other_d 0.001
    r_angle_refined_deg 1.354
    r_angle_other_deg 0.766
    r_dihedral_angle_1_deg 6.471
    r_dihedral_angle_2_deg 39.503
    r_dihedral_angle_3_deg 12.637
    r_dihedral_angle_4_deg 16.402
    r_chiral_restr 0.09
    r_gen_planes_refined 0.009
    r_gen_planes_other 0.002
    r_mcbond_it 0.736
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3005
    Nucleic Acid Atoms 0
    Heterogen Atoms 31
    Solvent Atoms 433
     
     
  •   Software and Computing Hide
    Computing
    Data Collection JDirector
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Refinement REFMAC 5.7.0032
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5
    data reduction Xscale