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X-RAY DIFFRACTION
Materials and Methods page
4JV0
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.4
    Temperature 298.0
    Details 50 MM TRIS HCL, 15% PEG3350, 100MM CALCIUM DIACETATE, 2.5% GLYCEROL, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 93.83 α = 90
    b = 104.49 β = 90
    c = 52.53 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Collection Date 2009-10-15
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 21-ID-F
    Wavelength 0.979
    Wavelength List 1.0
    Site APS
    Beamline 21-ID-F
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.95
    Resolution(Low) 50
    Number Reflections(Observed) 11170
    R Merge I(Observed) 0.124
     
    High Resolution Shell Details
    Resolution(High) 2.9
    Resolution(Low) 3.0
    R Merge I(Observed) 0.565
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.95
    Resolution(Low) 34.91
    Cut-off Sigma(F) 1.36
    Number of Reflections(Observed) 11170
    Number of Reflections(R-Free) 1118
    Percent Reflections(Observed) 98.1
    R-Factor(Observed) 0.2
    R-Work 0.192
    R-Free 0.27
     
    Temperature Factor Modeling
    Mean Isotropic B Value 71.5388
    Anisotropic B[1][1] 14.4796
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 3.7151
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -18.1947
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9502
    Shell Resolution(Low) 3.0844
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 1123
    R-Factor(R-Work) 0.3007
    R-Factor(R-Free) 0.4542
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0844
    Shell Resolution(Low) 3.2469
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 1203
    R-Factor(R-Work) 0.2469
    R-Factor(R-Free) 0.3177
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2469
    Shell Resolution(Low) 3.4502
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 1252
    R-Factor(R-Work) 0.2071
    R-Factor(R-Free) 0.3197
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4502
    Shell Resolution(Low) 3.7163
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1258
    R-Factor(R-Work) 0.1949
    R-Factor(R-Free) 0.2916
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7163
    Shell Resolution(Low) 4.0898
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1270
    R-Factor(R-Work) 0.1823
    R-Factor(R-Free) 0.2716
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0898
    Shell Resolution(Low) 4.6804
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1289
    R-Factor(R-Work) 0.1459
    R-Factor(R-Free) 0.223
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.6804
    Shell Resolution(Low) 5.8922
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1296
    R-Factor(R-Work) 0.1752
    R-Factor(R-Free) 0.215
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.8922
    Shell Resolution(Low) 34.9077
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 1361
    R-Factor(R-Work) 0.201
    R-Factor(R-Free) 0.2709
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_angle_d 1.3
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2744
    Nucleic Acid Atoms 595
    Heterogen Atoms 32
    Solvent Atoms 44
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution CNS
    Structure Refinement PHENIX (PHENIX.REFINE: 1.7.2_869)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix