X-RAY DIFFRACTION Experimental Data & Validation


Lost? View more X-Ray Crystallographic info.

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 5.5
Temperature 281.0
Details 20% (w/v) PEG 3000, 0.1M tri-sodium citrate pH 5.5, VAPOR DIFFUSION, temperature 281K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 47.21 α = 70.66
b = 62.94 β = 85.49
c = 84.41 γ = 79.51
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 -- AUSTRALIAN SYNCHROTRON MX2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.7 65 91.0 0.051 -- -- 6.5 99532 90575 2.0 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.7 1.79 83.2 0.305 -- 4.9 5.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
FOURIER SYNTHESIS 1.7 19.523 -- 1.97 99532 90551 1530 91.37 0.1533 0.1533 0.1528 0.1796 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.7 1.7548 -- 124 7338 0.1904 0.2529 -- 83.0
X Ray Diffraction 1.7548 1.8175 -- 130 7497 0.1851 0.2185 -- 85.0
X Ray Diffraction 1.8175 1.8902 -- 126 7609 0.1754 0.2479 -- 86.0
X Ray Diffraction 1.8902 1.9762 -- 136 7855 0.1723 0.2022 -- 89.0
X Ray Diffraction 1.9762 2.0803 -- 137 7958 0.1583 0.1976 -- 90.0
X Ray Diffraction 2.0803 2.2104 -- 137 8120 0.152 0.2092 -- 92.0
X Ray Diffraction 2.2104 2.3808 -- 140 8309 0.1542 0.1411 -- 94.0
X Ray Diffraction 2.3808 2.6199 -- 144 8443 0.155 0.1909 -- 95.0
X Ray Diffraction 2.6199 2.9978 -- 148 8525 0.16 0.2296 -- 96.0
X Ray Diffraction 2.9978 3.7725 -- 152 8665 0.1426 0.161 -- 98.0
X Ray Diffraction 3.7725 19.5241 -- 156 8702 0.1346 0.1341 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 20.8356
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.071
f_dihedral_angle_d 14.313
f_angle_d 1.058
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7172
Nucleic Acid Atoms 0
Heterogen Atoms 117
Solvent Atoms 1132

Software

Computing
Computing Package Purpose
blueice Data Collection
XDS Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHENIX Structure Solution
PHENIX (phenix.refine: 1.8.1_1168) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.1_1168) refinement
PHENIX model building
blueice data collection