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X-RAY DIFFRACTION
Materials and Methods page
4JT8
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    Details VAPOR DIFFUSION, HANGING DROP
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 117.28 α = 90
    b = 117.28 β = 90
    c = 45.59 γ = 120
     
    Space Group
    Space Group Name:    P 65
     
     
  •   Diffraction Hide
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 21-ID-D
    Site APS
    Beamline 21-ID-D
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.26
    Resolution(Low) 38.39
    Number Reflections(Observed) 16046
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.26
    Resolution(Low) 38.39
    Number of Reflections(Observed) 16046
    Number of Reflections(R-Free) 856
    Percent Reflections(Observed) 99.69
    R-Factor(Observed) 0.20359
    R-Work 0.20167
    R-Free 0.24074
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 42.747
    Anisotropic B[1][1] 0.07
    Anisotropic B[1][2] 0.04
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.07
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.11
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.26
    Shell Resolution(Low) 2.322
    Number of Reflections(R-Free) 58
    Number of Reflections(R-Work) 1162
    R-Factor(R-Work) 0.258
    R-Factor(R-Free) 0.345
    Percent Reflections(Observed) 98.79
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.572
    r_scbond_it 1.465
    r_mcangle_it 1.017
    r_mcbond_it 0.524
    r_gen_planes_refined 0.006
    r_chiral_restr 0.082
    r_dihedral_angle_4_deg 16.538
    r_dihedral_angle_3_deg 14.655
    r_dihedral_angle_2_deg 34.696
    r_dihedral_angle_1_deg 5.346
    r_angle_refined_deg 1.242
    r_bond_refined_d 0.01
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2145
    Nucleic Acid Atoms 0
    Heterogen Atoms 28
    Solvent Atoms 71
     
     
  •   Software and Computing Hide
    Computing
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109