X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Details VAPOR DIFFUSION, HANGING DROP

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 117.28 α = 90
b = 117.28 β = 90
c = 45.59 γ = 120
Symmetry
Space Group P 65

Diffraction

Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 21-ID-D -- APS 21-ID-D

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.26 38.39 -- -- -- -- -- -- 16046 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.26 38.39 -- -- -- 16046 856 99.69 -- 0.20359 0.20167 0.24074 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.26 2.322 -- 58 1162 0.258 0.345 -- 98.79
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 42.747
Anisotropic B[1][1] 0.07
Anisotropic B[1][2] 0.04
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.07
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.11
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 2.572
r_scbond_it 1.465
r_mcangle_it 1.017
r_mcbond_it 0.524
r_gen_planes_refined 0.006
r_chiral_restr 0.082
r_dihedral_angle_4_deg 16.538
r_dihedral_angle_3_deg 14.655
r_dihedral_angle_2_deg 34.696
r_dihedral_angle_1_deg 5.346
r_angle_refined_deg 1.242
r_bond_refined_d 0.01
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2145
Nucleic Acid Atoms 0
Heterogen Atoms 28
Solvent Atoms 71

Software

Computing
Computing Package Purpose
REFMAC 5.5.0109 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.5.0109 refinement