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X-RAY DIFFRACTION
Materials and Methods page
4JT4
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.6
    Temperature 298.0
    Details 100mM sodium citrate, 100mM MgCl2, 16-18% PEG 3350, 2mM dATP, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 45.31 α = 90
    b = 66.78 β = 90
    c = 119.55 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 130
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 6M
    Collection Date 2012-09-26
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X25
    Wavelength List 1.1
    Site NSLS
    Beamline X25
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -999.0
    Observed Criterion Sigma(I) -999.0
    Resolution(High) 2.01
    Resolution(Low) 45.5
    Number Reflections(All) 24436
    Number Reflections(Observed) 24363
    Percent Possible(Observed) 99.7
     
    High Resolution Shell Details
    Resolution(High) 2.01
    Resolution(Low) 2.07
    Percent Possible(All) 99.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method Direct refinement
    reflnsShellList 2.01
    Resolution(Low) 44.538
    Cut-off Sigma(F) 1.35
    Number of Reflections(all) 24577
    Number of Reflections(Observed) 24307
    Number of Reflections(R-Free) 1916
    Percent Reflections(Observed) 98.07
    R-Factor(Observed) 0.159
    R-Work 0.1538
    R-Free 0.2176
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.01
    Shell Resolution(Low) 2.063
    Number of Reflections(R-Free) 106
    Number of Reflections(R-Work) 1277
    R-Factor(R-Work) 0.1513
    R-Factor(R-Free) 0.2544
    Percent Reflections(Observed) 80.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.063
    Shell Resolution(Low) 2.1188
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 1573
    R-Factor(R-Work) 0.1487
    R-Factor(R-Free) 0.2006
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1188
    Shell Resolution(Low) 2.1812
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 1596
    R-Factor(R-Work) 0.1382
    R-Factor(R-Free) 0.2172
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1812
    Shell Resolution(Low) 2.2516
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 1596
    R-Factor(R-Work) 0.139
    R-Factor(R-Free) 0.1974
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2516
    Shell Resolution(Low) 2.332
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1568
    R-Factor(R-Work) 0.1449
    R-Factor(R-Free) 0.2158
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.332
    Shell Resolution(Low) 2.4254
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1604
    R-Factor(R-Work) 0.164
    R-Factor(R-Free) 0.2602
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4254
    Shell Resolution(Low) 2.5358
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1627
    R-Factor(R-Work) 0.1625
    R-Factor(R-Free) 0.2686
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5358
    Shell Resolution(Low) 2.6695
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 1621
    R-Factor(R-Work) 0.1679
    R-Factor(R-Free) 0.2463
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6695
    Shell Resolution(Low) 2.8367
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 1604
    R-Factor(R-Work) 0.1545
    R-Factor(R-Free) 0.2286
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8367
    Shell Resolution(Low) 3.0557
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 1620
    R-Factor(R-Work) 0.1613
    R-Factor(R-Free) 0.2055
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0557
    Shell Resolution(Low) 3.3631
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1630
    R-Factor(R-Work) 0.1561
    R-Factor(R-Free) 0.2218
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3631
    Shell Resolution(Low) 3.8495
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1647
    R-Factor(R-Work) 0.1434
    R-Factor(R-Free) 0.2047
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8495
    Shell Resolution(Low) 4.849
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1668
    R-Factor(R-Work) 0.1333
    R-Factor(R-Free) 0.1847
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.849
    Shell Resolution(Low) 44.549
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 1760
    R-Factor(R-Work) 0.1814
    R-Factor(R-Free) 0.2271
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.078
    f_dihedral_angle_d 16.235
    f_angle_d 1.273
    f_bond_d 0.01
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2738
    Nucleic Acid Atoms 0
    Heterogen Atoms 63
    Solvent Atoms 279
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CBASS
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.8.2_1309)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8.1_1168)
    model building PHENIX
    data collection CBASS