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X-RAY DIFFRACTION
Materials and Methods page
4JST
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.6
    Temperature 298.0
    Details 100mM sodium citrate, 100mM MgCl2, 16-18% PEG 3350, 2mM UTP, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 45.31 α = 90
    b = 66.78 β = 90
    c = 119.55 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 130
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 6M
    Collection Date 2012-09-26
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X25
    Wavelength List 1.1
    Site NSLS
    Beamline X25
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -999.0
    Observed Criterion Sigma(I) -999.0
    Resolution(High) 2.03
    Resolution(Low) 46.1
    Number Reflections(All) 24709
    Number Reflections(Observed) 24709
    Percent Possible(Observed) 100.0
     
    High Resolution Shell Details
    Resolution(High) 2.03
    Resolution(Low) 2.08
    Percent Possible(All) 100.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method Direct refinement
    reflnsShellList 2.03
    Resolution(Low) 44.538
    Cut-off Sigma(F) 1.34
    Number of Reflections(all) 24153
    Number of Reflections(Observed) 24105
    Number of Reflections(R-Free) 1901
    Percent Reflections(Observed) 99.76
    R-Factor(Observed) 0.1745
    R-Work 0.1701
    R-Free 0.2244
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.03
    Shell Resolution(Low) 2.0809
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 1538
    R-Factor(R-Work) 0.1939
    R-Factor(R-Free) 0.2728
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0809
    Shell Resolution(Low) 2.1372
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 1551
    R-Factor(R-Work) 0.2064
    R-Factor(R-Free) 0.2653
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1372
    Shell Resolution(Low) 2.2
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 1546
    R-Factor(R-Work) 0.189
    R-Factor(R-Free) 0.2441
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2
    Shell Resolution(Low) 2.2711
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 1574
    R-Factor(R-Work) 0.1892
    R-Factor(R-Free) 0.2728
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2711
    Shell Resolution(Low) 2.3522
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 1549
    R-Factor(R-Work) 0.189
    R-Factor(R-Free) 0.2945
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3522
    Shell Resolution(Low) 2.4464
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1580
    R-Factor(R-Work) 0.1821
    R-Factor(R-Free) 0.2821
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4464
    Shell Resolution(Low) 2.5577
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 1569
    R-Factor(R-Work) 0.1871
    R-Factor(R-Free) 0.2423
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5577
    Shell Resolution(Low) 2.6926
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 1569
    R-Factor(R-Work) 0.19
    R-Factor(R-Free) 0.2619
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6926
    Shell Resolution(Low) 2.8612
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 1574
    R-Factor(R-Work) 0.1781
    R-Factor(R-Free) 0.2233
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8612
    Shell Resolution(Low) 3.0821
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1590
    R-Factor(R-Work) 0.1847
    R-Factor(R-Free) 0.2209
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0821
    Shell Resolution(Low) 3.3922
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1596
    R-Factor(R-Work) 0.1713
    R-Factor(R-Free) 0.2462
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3922
    Shell Resolution(Low) 3.8828
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 1613
    R-Factor(R-Work) 0.1608
    R-Factor(R-Free) 0.218
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8828
    Shell Resolution(Low) 4.8909
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1630
    R-Factor(R-Work) 0.1318
    R-Factor(R-Free) 0.1529
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8909
    Shell Resolution(Low) 44.5489
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 1725
    R-Factor(R-Work) 0.1581
    R-Factor(R-Free) 0.1966
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.072
    f_dihedral_angle_d 17.189
    f_angle_d 1.26
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2738
    Nucleic Acid Atoms 0
    Heterogen Atoms 61
    Solvent Atoms 266
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CBASS
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8.1_1168)
    model building PHENIX
    data collection CBASS