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X-RAY DIFFRACTION
Materials and Methods page
4JSR
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8
    Temperature 291.15
    Details 0.1M Tris pH 8.0, 20% PEG 4000 or 20% PEG 6000, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 119.32 α = 90
    b = 119.32 β = 90
    c = 44.53 γ = 120
     
    Space Group
    Space Group Name:    P 65
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SSRF BEAMLINE BL17U
    Site SSRF
    Beamline BL17U
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.7
    Resolution(Low) 40
    Number Reflections(Observed) 38011
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.7
    Resolution(Low) 40.0
    Number of Reflections(Observed) 38011
    Number of Reflections(R-Free) 2006
    Percent Reflections(Observed) 99.93
    R-Factor(Observed) 0.19959
    R-Work 0.19805
    R-Free 0.22836
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 27.587
    Anisotropic B[1][1] 0.18
    Anisotropic B[1][2] 0.09
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.18
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.27
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7
    Shell Resolution(Low) 1.745
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2777
    R-Factor(R-Work) 0.314
    R-Factor(R-Free) 0.35
    Percent Reflections(Observed) 99.28
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 5.392
    r_scbond_it 3.609
    r_mcangle_it 2.468
    r_mcbond_it 1.567
    r_gen_planes_refined 0.014
    r_chiral_restr 0.191
    r_dihedral_angle_4_deg 16.93
    r_dihedral_angle_3_deg 15.451
    r_dihedral_angle_2_deg 34.212
    r_dihedral_angle_1_deg 6.253
    r_angle_refined_deg 2.465
    r_bond_refined_d 0.03
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2148
    Nucleic Acid Atoms 0
    Heterogen Atoms 34
    Solvent Atoms 306
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution Phaser
    Structure Refinement REFMAC 5.5.0066
     
    Software
    refinement REFMAC version: 5.5.0066
    model building Phaser
    data collection HKL-2000