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X-RAY DIFFRACTION
Materials and Methods page
4JRT
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion
    pH 7
    Temperature 310.0
    Details Sodium Cacodylate, Lithium acetate, PEG3350, pH 7.0, vapor diffusion, temperature 310K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 29.33 α = 90
    b = 29.33 β = 90
    c = 89.76 γ = 90
     
    Space Group
    Space Group Name:    P 43
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Collection Date 2009-07-04
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID23-1
    Wavelength List 1.0723
    Site ESRF
    Beamline ID23-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.6
    Resolution(Low) 20.7
    Number Reflections(Observed) 2330
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.6
    Resolution(Low) 20.7
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 2330
    Number of Reflections(R-Free) 220
    Percent Reflections(Observed) 99.4
    R-Work 0.1848
    R-Free 0.2275
     
    Temperature Factor Modeling
    Mean Isotropic B Value 76.1548
    Anisotropic B[1][1] 21.02
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 21.02
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -42.04
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6
    Shell Resolution(Low) 2.69
    Number of Reflections(R-Free) 22
    Number of Reflections(R-Work) 211
    R-Factor(R-Work) 0.3756
    R-Factor(R-Free) 0.4593
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.69
    Shell Resolution(Low) 2.8
    Number of Reflections(R-Free) 25
    Number of Reflections(R-Work) 198
    R-Factor(R-Work) 0.3873
    R-Factor(R-Free) 0.3398
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8
    Shell Resolution(Low) 2.93
    Number of Reflections(R-Free) 26
    Number of Reflections(R-Work) 225
    R-Factor(R-Work) 0.3556
    R-Factor(R-Free) 0.4286
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.93
    Shell Resolution(Low) 3.08
    Number of Reflections(R-Free) 15
    Number of Reflections(R-Work) 203
    R-Factor(R-Work) 0.2959
    R-Factor(R-Free) 0.3369
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.08
    Shell Resolution(Low) 3.28
    Number of Reflections(R-Free) 23
    Number of Reflections(R-Work) 223
    R-Factor(R-Work) 0.2167
    R-Factor(R-Free) 0.287
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.28
    Shell Resolution(Low) 3.53
    Number of Reflections(R-Free) 19
    Number of Reflections(R-Work) 198
    R-Factor(R-Work) 0.2351
    R-Factor(R-Free) 0.2602
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.53
    Shell Resolution(Low) 3.88
    Number of Reflections(R-Free) 18
    Number of Reflections(R-Work) 222
    R-Factor(R-Work) 0.1689
    R-Factor(R-Free) 0.1995
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.88
    Shell Resolution(Low) 4.45
    Number of Reflections(R-Free) 26
    Number of Reflections(R-Work) 214
    R-Factor(R-Work) 0.1314
    R-Factor(R-Free) 0.1901
    Percent Reflections(Observed) 99.2
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.45
    Shell Resolution(Low) 5.6
    Number of Reflections(R-Free) 22
    Number of Reflections(R-Work) 212
    R-Factor(R-Work) 0.1256
    R-Factor(R-Free) 0.1971
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.6
    Shell Resolution(Low) 100.0
    Number of Reflections(R-Free) 24
    Number of Reflections(R-Work) 204
    R-Factor(R-Work) 0.1612
    R-Factor(R-Free) 0.1843
    Percent Reflections(Observed) 94.6
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_scangle_it 2.268
    c_mcangle_it 0.0
    c_scbond_it 1.526
    c_mcbond_it 0.0
    c_angle_d 1.195
    c_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 0
    Nucleic Acid Atoms 517
    Heterogen Atoms 0
    Solvent Atoms 23
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) CrystalClear
    Data Reduction (data scaling) Crystalclear
    Structure Solution AMORE
    Structure Refinement CNS
     
    Software
    data extraction pdb_extract version: 3.11
    refinement CNS
    molecular replacement AMORE