X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 4.5
Temperature 298.0
Details 50% PEG400, 200mM LiSO4, 100mM Na acetate, 9.46mg/ml BuceA.18084.a.PW33863, direct cryoprotection, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 96.02 α = 90
b = 96.02 β = 90
c = 96.02 γ = 90
Symmetry
Space Group P 43 3 2

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2012-10-18
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 5.0.1 0.97 ALS 5.0.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 42.98 100.0 0.111 -- -- -- -- 11700 -- -3.0 20.707
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 2.0 100.0 0.437 -- 6.75 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.9 42.98 -- 0.0 -- 11700 584 98.41 -- 0.164 0.1624 0.1959 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.949 -- 36 805 0.186 0.228 -- 93.65
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 18.3399
Anisotropic B[1][1] 0.0
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.0
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.0
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_other 0.001
r_mcbond_it 0.895
r_mcbond_other 0.869
r_mcangle_it 1.548
r_angle_other_deg 0.775
r_dihedral_angle_4_deg 13.889
r_chiral_restr 0.083
r_bond_other_d 0.001
r_bond_refined_d 0.011
r_dihedral_angle_3_deg 11.243
r_dihedral_angle_1_deg 5.785
r_gen_planes_refined 0.006
r_dihedral_angle_2_deg 37.008
r_angle_refined_deg 1.349
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 832
Nucleic Acid Atoms 0
Heterogen Atoms 14
Solvent Atoms 115

Software

Software
Software Name Purpose
XSCALE data scaling
PHASER phasing version: 2.5.2
REFMAC refinement
PDB_EXTRACT data extraction version: 3.11
XDS data reduction